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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019926
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.715s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055339.1
n.a. PREDICTED: 50S ribosomal protein L3-1, chloroplastic-like [Glycine max] gi|356507166|ref|XP_003522341.1| chr0 17847299 17849124 -
2 domain predictions
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Lj0g3v0171439.1
n.a. PREDICTED: 60S ribosomal protein L3-like [Glycine max] gi|356576067|ref|XP_003556156.1| chr0 82188354 82192407 -
2 domain predictions
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Lj3g3v2737570.1
n.a. PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502099927|ref|XP_004491593.1| chr3 33828612 33832107 -
2 domain predictions
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Lj3g3v2737570.2
n.a. PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502099927|ref|XP_004491593.1| chr3 33829846 33832107 -
2 domain predictions
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Lj4g3v0335820.1
n.a. PREDICTED: 60S ribosomal protein L3-like [Vitis vinifera] gi|225460636|ref|XP_002265125.1| chr4 3806886 3810643 -
2 domain predictions
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Lj5g3v1938430.1
n.a. PREDICTED: 60S ribosomal protein L3-like [Glycine max] gi|356535772|ref|XP_003536417.1| chr5 27374595 27377475 -
2 domain predictions
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Lj5g3v1938430.2
n.a. PREDICTED: 60S ribosomal protein L3-like [Glycine max] gi|356535772|ref|XP_003536417.1| chr5 27379589 27382890 -
2 domain predictions
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LotjaGi1g1v0557000.1
n.a. 50S ribosomal protein L3; TAIR: AT2G43030.1 Ribosomal protein L3 family protein; Swiss-Prot: sp|O80360|RK3_TOBAC 50S ribosomal protein L3, chloroplastic; TrEMBL-Plants: tr|I3SYM4|I3SYM4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0557000 LjG1.1_chr1 108889914 108892134 -
2 domain predictions
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LotjaGi3g1v0435200.1
n.a. 50S ribosomal protein L3, putative; TAIR: AT3G17465.1 ribosomal protein L3 plastid; Swiss-Prot: sp|Q9LRN8|RK3B_ARATH 50S ribosomal protein L3-2, chloroplastic; TrEMBL-Plants: tr|A0A151SVP2|A0A151SVP2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0435200 LjG1.1_chr3 84657689 84662280 -
2 domain predictions
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LotjaGi3g1v0435200.3
n.a. 50S ribosomal protein L3, putative; TAIR: AT3G17465.1 ribosomal protein L3 plastid; Swiss-Prot: sp|Q9LRN8|RK3B_ARATH 50S ribosomal protein L3-2, chloroplastic; TrEMBL-Plants: tr|A0A151SVP2|A0A151SVP2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0435200 LjG1.1_chr3 84658942 84661953 -
2 domain predictions
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LotjaGi4g1v0029300.1
n.a. Ribosomal protein L3; TAIR: AT1G61580.1 R-protein L3 B; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|F6GY49|F6GY49_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0029300 LjG1.1_chr4 3613816 3618013 -
2 domain predictions
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LotjaGi4g1v0029300.2
n.a. Ribosomal protein L3; TAIR: AT1G61580.1 R-protein L3 B; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|F6GY49|F6GY49_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0029300 LjG1.1_chr4 3614012 3618150 -
2 domain predictions
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LotjaGi4g1v0029300.3
n.a. Ribosomal protein L3; TAIR: AT1G61580.1 R-protein L3 B; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|F6GY49|F6GY49_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0029300 LjG1.1_chr4 3614375 3617991 -
2 domain predictions
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LotjaGi5g1v0289400.1
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612051 60615481 -
2 domain predictions
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LotjaGi5g1v0289400.2
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612051 60620980 -
2 domain predictions
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LotjaGi5g1v0289400.3
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612051 60620980 -
2 domain predictions
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LotjaGi5g1v0289400.4
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612313 60620937 -
2 domain predictions
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LotjaGi5g1v0289400.5
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612313 60620937 -
2 domain predictions
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LotjaGi5g1v0289400.6
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612317 60620951 -
2 domain predictions
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LotjaGi5g1v0289400.7
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612603 60615077 -
2 domain predictions
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LotjaGi5g1v0289400.8
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60612603 60615710 -
2 domain predictions
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LotjaGi5g1v0289400.9
n.a. Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 LjG1.1_chr5 60617058 60620942 -
2 domain predictions
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