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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0029300 |
| Transcript ID | LotjaGi4g1v0029300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein L3; TAIR: AT1G61580.1 R-protein L3 B; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|F6GY49|F6GY49_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0029300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3613816..3618013) extracted from Lotus japonicus Gifu genome v1.2.
TTTCGTTTAGGGTTAGAGATGTAGAAGTTGCAGAGAATTGCGCTGCGGCCAAACCTTCATATAAAGGCCAAGACTGTGCT CGAAACCCTCACCATTTCTTCTCCATCTCGTGCAATCGCCGCAGGTACAGTGGCATCAACCCTAGCTTGCTCTCTCGATT TTGCGATTTGTGAACGATGGATCCGTTTGTGTTCTCGTTGTTTCATCTGAATTTGATCATCAATGCTAATGTTTTGATCT TCCATTCCTTGTAGTTGAAGCAGGAAATCATGTCTCACCGGAAGTTCGAGCACCCCAGGCACGGTTCCCTTGGATTTCTC CCAAGGAAACGAGCTTCTCGTCAACGTGGAAAAGGTGAACCTGCTTTTCTGTTTGTAATGTTTCATCTGAAAATTGATTT GATCGTCAAATAGCTTGTTTGAAAATTGAAACTGTTTTGTGTGAACTCGTTTTTTTATCCTATTCGTTGCTGTACATTCA TGTTTGTTGCCATTTCCTTGTGGTGAATGAAATTGCTTCAGAAAAGAAATGAATTAATCAAGGCTGTAGTCTCTGAATCA GCTCGTCTAGCTAAATTCCTCTGAATAGAGGTTTTGGTATGGAACCCTCCAAATGAGCTAGAGATTTGGCATTGCCATAG GCCTTTGGTTTGGAAGCATTTCTTCATTCATGGGATTGGTGCTAATCATTTATGTACTGCAATGTTTAGGGTAATCAGTT TTTTTTCTCAATCAGATCCCAGGCTCTCTTTTGTTGGACTTAATTTTTTTCTCTATTTTCAACTTCACTGGATTTTTTAT ATGGATGTATTTGAATTATAAATTATGAATTCTGTTGTGGAATATTTGATTGGTTTTTGGAATATGCAATGTGAAACATT TTAATTGATACCACTGGTTTATCTTTTCTAATGTTGAAATCTTATGCTTTTCCTTGATAAGATCTATGTAAATCAAAAAA AGAATAAAGAAAAATGTGTTGTGGATACGATCAGAATTTGAATGATAAAAAGTTGTGATTTGCTTTTGTTTTCTGTGATT TGTCCAATTGAATATATTATGTGGGCTTTAACATTACAATATGGTGCTGTCTTTTGACACAATTTGCCTCCCTTCTACTG TGAAATTTAGCAACCATCAAGTATTATACATTATAGATATCAATCCTTCATCATGTTGTGCTTTTTTCAGCTAAGGGACA AGCAGGCCTCTGCCAGTGTCCTGTCTCGTCTCTCTGGTGCTATGCACCAATACATATTCTAATTTTCATCTCTTTAAGCA CCCTACTATGATTTATCTGTCTATTGATATCCATCTCAATTTTATATTGGTGAATTACATTTGTGAAGTGTTCTGCAGTT TTTCTCATCTTAGCTTGTGGTCCATGTAATATCTCCTTGCCAATTCGCATGATAATATGCCTGGCGGTAAGGTTTGGTTA TTTATCTTGTACTGTTCTTAGCACCTTACATCTCTTTAAATTTGCTGCTGCAGTGAAGTCTTTCCCAAAAGATGATCCTA GCAAGCCATGCAGATTGACTGCCTTTTTGGGCTACAAGGCTGGGATGACCCACATCGTTAGAGAGGTTGAGAAACCTGGA TCAAGTAAGCTTGGATACCTTGAACTTGAGATGCTTATGGGTCTTTAAACAAGTTATTTCACGTGAACATGAGATCCTTA GGGGGCTTTAATCAAGTTATTTCATGATAACATTTCAAAACGGGATTGATAAATGAGTTTTTGTCTTTGTTATCTGACTT AACTGTTACTTCTTGATTTTCAACTAATCTTGCTTGGGTATTTCCCCTTATGTATTTTTTTTTTGATAGGAAAATGTTAG TTGTTAGAAATGTTAGTAAATTAATCCCTCCTCTGGGTTCAAACCCGGGACCCTTCACCCTTCATCCCACCCAACCCCTA TGTCCCTAGCTCTTACCTCTTGAGCTATCCTCCCTTATTTCCCCTTATGTATTTAACTTTCAGTTTTATAATTTTTTGCC TTTCATTCATTCCATGTGGAAAATCAGGGTTCTTTTTGAATTTTAATAGTTTGAATGTGAAAGTTGTAAAATTTAATTAT TGTTCAAATTATATGTATCCACATCTATAATTTTCATAGATGCCTTTTCTAAAAACATTGTTAATTTCATGTATTAAAAT TCCTTTAATTATAATTGTATGATCATTTTGTGGGGTGTTAATTATTTTTCCCACTTTGCATTATATGTCCCTGGTCACCT TGTACTTATGACATTCTCTACTGCAGAACTTCATAAGAAAGAGACATGTGAAGCTGTTACTATCATTGAAACTCCTCCAT TGGTTGTTGTTGGAGTTGTGGGTTATGTGAAGACCCCTCGCGGTCTTCGCACACTGAATACTGTTTGGGCTCAGCATTTA AGTGAGGATGTTAAGAGACGATTCTACAAAAACTGGTGCAAATCTAAAAAGAAGGCGTTTACCAAATATTCAAAGAAATT TGAAACTGAGGAAGGAAAGAAAGATGTTCAATCTCAGCTTGAGAAGATGAAAAAGTATTCAACTATCATTCGTGTTCTGG CTCATACTCAGGTAAGAATTTGTTTCATGGTTTGAGTTTGGTTCTATTGTAGCTTTGTAAATAAACTTTTTGATTCCCAC ACCTCACTGAAGTAAATGTATTGTTAATCTATGTATTGTTAATCTTATGGCATTCTAATATAGTGAATCTAGATTCTTTA TCTTTGCATTCAGTTTTATTATGATGTGTATGTTTTACATATTAAAGGATACTGTTTTGTGTACTTACAAGCCACTGCAT TCATATTTGTGATGTAATAGTTTTTCCCTTAACTGCAGATAAGGAAGTTGAATGGTCTTAAACAGAAGAAGGCACATTTG ATGGAGATCCAAGTTAATGGTGGGACAGTGAGCCAGAAGGTTGACTATGCATACAGCTTCTTCGAGAAGCAAATCCCTGT GGATACTGTTTTCCAGAAAGATGAGATGATAGATATCATTGGTGTGACCAAGGGTAAAGGTTACGAAGGTGTTGTGACTC GTTGGGGTGTCACTCGCCTTCCCCGCAAGACACACAGGGGTCTAAGGAAGGTCGCATGTATTGGTGCTTGGCACCCTGCT CGTGTCTCCTTCACAGTTGCCAGGGCTGGTCAAAATGGATATCATCATCGTACTGAGCTGAATAAAAAGATCTACAAGGT CGGCAAGACCGGTGAAGAGTCCCATACAGCCATCACTGAATTTGACAGGTATAGTAGTTTTTATGTTTTCTTTTCTTGGT ACCGACCCATTAGAATGGAGGAAGATCAAATAGGAAGTCTGTATCAAATTATGCATTATTTGATCAACTTGTTTGCCCCA CTAACTTTTGCTAATGACAGGACTGAGAAGGATATCACTCCAATGGGTGGATTCCCTCACTATGGTGTGGTGAACCATGA TTATATTCTGGTCAAGGGTTGCTGTGTTGGACCGAAGAAGCGGGTTATCACTCTTCGTCAGTCCCTACTTAAGCAGACAT CTCGTTTGGCTCTTGAAGAGATCAAGTTGAAGTTCATTGACACCTCATCCAAGTTTGGACATGGCCGCTTCCAGACCTCT CAGGAGAAACAGAAGTTTTATGGCCGGCTGAAGGCTTAAAATTTCCAGTGTATCTCTTCACTTGAAGAGCTATTGCTTTT CAATTTTTGCCGCAGAATTAAGATATTTATTGGTCTCTTTTTACCACCTAGTTAGACGATGGTGATTTTGTTTCTGTTGG TTGGCTTTCAAGTTTGAACACTTGTTTTTGCCGTTTTCACTCTGGATTAAGTTAAAAAAATTGTTCCTTTTGCTGTCGTA TGTGGTGGTTAATATAATGATGAGCGTTGCGCTTCTTTAATTTCGCAGATTGTGTCACAAAACCATAGAAAGGGTGGCTC TTTAAAAAGGGTATAAGTTTTACTTCGTGGCTTTAGTCTTGTTTAAATGTCGTTGACAAAAAAACCTCTACCTTCATCGA TGATTTGTTTCTTTTTCGTCTTTTTCAAATCAATGTAAACAATGTGCAAATCATTTTTCTTATAATATCTCTCCAATCCC CTGGGTAAAGAGCAATTAATTTTCTTTACGTGGTTTATATCTGCTGAATTACTCTCACATCTTTATCACTCATATAAGAG TGATGGTATATTAATATACGCTTTTTTTTATACACGCC
CDS sequence (LotjaGi4g1v0029300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCACCGGAAGTTCGAGCACCCCAGGCACGGTTCCCTTGGATTTCTCCCAAGGAAACGAGCTTCTCGTCAACGTGG AAAAGTGAAGTCTTTCCCAAAAGATGATCCTAGCAAGCCATGCAGATTGACTGCCTTTTTGGGCTACAAGGCTGGGATGA CCCACATCGTTAGAGAGGTTGAGAAACCTGGATCAAAACTTCATAAGAAAGAGACATGTGAAGCTGTTACTATCATTGAA ACTCCTCCATTGGTTGTTGTTGGAGTTGTGGGTTATGTGAAGACCCCTCGCGGTCTTCGCACACTGAATACTGTTTGGGC TCAGCATTTAAGTGAGGATGTTAAGAGACGATTCTACAAAAACTGGTGCAAATCTAAAAAGAAGGCGTTTACCAAATATT CAAAGAAATTTGAAACTGAGGAAGGAAAGAAAGATGTTCAATCTCAGCTTGAGAAGATGAAAAAGTATTCAACTATCATT CGTGTTCTGGCTCATACTCAGATAAGGAAGTTGAATGGTCTTAAACAGAAGAAGGCACATTTGATGGAGATCCAAGTTAA TGGTGGGACAGTGAGCCAGAAGGTTGACTATGCATACAGCTTCTTCGAGAAGCAAATCCCTGTGGATACTGTTTTCCAGA AAGATGAGATGATAGATATCATTGGTGTGACCAAGGGTAAAGGTTACGAAGGTGTTGTGACTCGTTGGGGTGTCACTCGC CTTCCCCGCAAGACACACAGGGGTCTAAGGAAGGTCGCATGTATTGGTGCTTGGCACCCTGCTCGTGTCTCCTTCACAGT TGCCAGGGCTGGTCAAAATGGATATCATCATCGTACTGAGCTGAATAAAAAGATCTACAAGGTCGGCAAGACCGGTGAAG AGTCCCATACAGCCATCACTGAATTTGACAGGACTGAGAAGGATATCACTCCAATGGGTGGATTCCCTCACTATGGTGTG GTGAACCATGATTATATTCTGGTCAAGGGTTGCTGTGTTGGACCGAAGAAGCGGGTTATCACTCTTCGTCAGTCCCTACT TAAGCAGACATCTCGTTTGGCTCTTGAAGAGATCAAGTTGAAGTTCATTGACACCTCATCCAAGTTTGGACATGGCCGCT TCCAGACCTCTCAGGAGAAACAGAAGTTTTATGGCCGGCTGAAGGCTTAA
Protein sequence (LotjaGi4g1v0029300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHRKFEHPRHGSLGFLPRKRASRQRGKVKSFPKDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIE TPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEDVKRRFYKNWCKSKKKAFTKYSKKFETEEGKKDVQSQLEKMKKYSTII RVLAHTQIRKLNGLKQKKAHLMEIQVNGGTVSQKVDYAYSFFEKQIPVDTVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTGEESHTAITEFDRTEKDITPMGGFPHYGV VNHDYILVKGCCVGPKKRVITLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTSQEKQKFYGRLKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 273 | 273 | 1.6E-205 | – | |
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 1 | 389 | 389 | 5.3E-260 | – | |
| PANTHER | 1 | 389 | 389 | 5.3E-260 | – | |
| Pfam | 1 | 370 | 370 | 7.2E-193 | ||
| SUPERFAMILY | 4 | 370 | 367 | 6.8E-112 | ||
| Gene3D | 44 | 385 | 342 | 1.6E-205 | – | |
| Gene3D | 83 | 206 | 124 | 1.6E-205 | – | |
| ProSitePatterns | 212 | 235 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi4g1v0029300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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