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LotjaGi5g1v0289400.8

Overview

Field Value
Gene ID LotjaGi5g1v0289400
Transcript ID LotjaGi5g1v0289400.8
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:60612603..60615710) extracted from Lotus japonicus Gifu genome v1.2.

CTAAGCGGTAGGGGGCTGGCCAAGGAGTTTCCTCTATTCGCAAGAGTTAGGATTCAAACCCTCAACTACTTGCTTAAAGG ATGAAGTGCTGAACCACTACACCAGCTCACTTGGTTACCATGTTAGTGAATATACATATACATTATGCTCTAAAAATAAA ACTTCTTTTTCATTTTAATTTCTTACAATTTTTTTCCTAGCTCCATTCATTTTGTTGGAAAAAATGAGTCCAAGCTCCAA GCTAGAAGGTCCATCCCAAACCCAACAAGAAACAAAAGCCCATAGAACTTTAGCAGCCCAGCCACAACAAATAAAATCAG AGAGAAATTAGGGTTTTAGCTCAGTTCCTGCAACTCAGGTCTTCACTCGCCGCTGCTGCAGGTTCTCTTCCAAATCTCAT CTTCTCCACCATTTTCCCCCATTTTCTCACCTGCCATTGCTTCCTTCGTTGTCTTCATTATTTTCGTTTCAAGATTCTCA GTACGACAATCCATTTTTCAACCAAACTTGTTGATTCCGTGTTTTCTCTTGCATTTCTGATTCTTAACGCGATTATTATC AATTGTTGTGTTTAATGCATCATTCTGGAATCTCCATTGATTTGTATTTTTGTTTTGATTTTGAAGGAGAAGGAGAAGGA TGTCTCACAGGAAGTTCGAGCACCCCAGACATGGGTCACTGGGATTTCTCCCTAGGAAGCGTGCTGCACGTCACAGGGGA AAAGGTTTGTTCTTTGTATCTGGGCATCTGTTGTTTCAATTGCCAAGTATTGCTGCTGTGAATTTGTGAAACAAAACTAC GAGGATGTTATGTTGTAATTTTTTTGGTGAATGGATCCTCCTCATGTTTTTGCTTTAAATTGTTGATTACAAACTTGCAA CAATTTCCTTACACCCATTTCATGATGTTTTCCAATCAAATAGTGATATGTAGTCAAGTTTTTAAAATTCATATACAAGT GTTATTGTTTGAGTGGAGAACTTGATTGTGAGAATACAAGTGACTTGATCTATGTTTATTCCCTCATATCAGAATCTGAT TTTTTAACATTTGTAATTTTTACCTGTGCAGTGAAGTCATTCCCTAAGGATGACCCATCCAAGTCACCCAAGCTTACTGC CTTCTTGGGTTACAAGGCTGGTATGACTCACATTGTCAGAGAGGTCGAGAAGCCAGGATCAAGTGAGTCACATTCGTATC AAATTTTCTTATCGTTCTCACTTAAATGTATCCTGTGGAAGTCAATATTGGTGCTGGTTTTTATTTCCTTCAAATTATGG GATGGAATGAGTAATTTTAGGGAAACAGATGTTTTGAAATACACTTGTTCATGTGCTCTTTCAGGTTATGGATATAGCTC CTTCAGTTTTTTTTTTCTATGTAGAATGGTATTATTAAACTGCATGTTTTAGTCAATTTTGGTTGTGAAGTATATGTCAG TAATTATGCTTCATTCTTTTATTGTTGTAATGAACATTATAAGCCGATGTATGGTATCCATTTTTATTGTAAAATTACAT TAACGCAATTCTTTTGCAACAGAGCTTCACAAGAAGGAGACTTGCGAGCCAGTTACAATCATTGAGACCCCTCCAATGGT TATTGTTGGTGTTGTGGGCTATGTGAAAACTCCCCGTGGTATGCGAACATTGAACACTGTTTGGGCTCAGCATTTGAGTG AGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCTCCAAGTACTCCAAGCAGTTTGAG TCTGAAGAAGGGAAGAAAAATGTTCAGGCACAGTTGGAGAAAATTAAGAAGTATGCAACTGTTGTCCGTGTGTTGGCTCA CACTCAGGTACTTCCTATGACAAAGTGATTTCATATTCTGGGTGTTCTACGTTATGAAGGTTAACTATACGTTTTATAAA CGTTTATGTTTTTTGGGTGATGAGAATGATGAGATTCTTGTTCTTGTGCTAACGCAGTGCCATTTAATTTGGTGCAATGA GCGGCACTTTCCACACGAGATTTCTGACACCCTCTTGTTTTAATTTCTTTTTGATGTTTTTTGTGCTGTCAAGAAAAATA TAGGGGCAAATGAAACTGTAATATTTTCTATGGCAAATGTTTTGGGTTTCTGTAGATCACCTGGCAATTCCAAATTCTTC CATTTGTGTTTTATCTCTCAATTTATCATTTCATGTTACATGATTTTAAATACTAATACCATTGTTAGCCAAATTCTAAA TCACCTCCAATTATATTTATTTGGTGTATTTGGTATAAATTTCTAATATTATTGTATATCAATCTCACAGATCAGAAAAA TGAAAGGGTTGAAGCAGAAGAAAGCCCACATCATGGAAATTCAGGTCAATGGTGGGACTGTGGCACAGAAGGTGGACTTT GCTTACAGTTTCTTCGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACATCATTGGGGTGAC CAAAGGTAAGGGTTATGAGGGTGTTGTGACCCGTTGGGGTGTTACCCGTCTTCCTCGCAAGACTCACAGGGGTTTGAGGA AGGTTGCTTGTATTGGTGCATGGCATCCAGCAAGAGTTTCTTTCACTGTTGCCAGGGCTGGTCAAAATGGATACCATCAC CGAACTGAGCTGAACAAGAAGATTTACAGGCTTGGCAAGGCTGGAGACGAGTCGCACTCAGCCATTACTGAGTTTGATAG GTGAGAAACTTGCTGATTATTTATTATTGCATGCAATAAATCACTGGACAGCAAGAAATATGCTGATTGTTTGTTTCACA GTAGACTATCATTCAGGTTCAAACTAATCCGACTTATTTTCTGAACCAGGACTGAGAAGGAGATTACCCCAATGGGTGGA TTCCCACACTACGGTATTGTGAAGGATGATTTCCTCATGATCAAAGGAGGCTGTGTTGGTCCCAAGAAAAGGGTTATCAC ATTGCGTCAATCCCTGCTTAAGCAGACTTCTCGTGTTGCTTTGGAGGAGATCAAACTCAAGTTTATCGACACCTCTTCAA AGTTTGGACATGGGCGCTTCCAGTCCACTCAAGAGAAGCAGAAGTTCTATGGACGCCTCAAAGCTTAA 

CDS sequence (LotjaGi5g1v0289400.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCCAGACATGGGTCACTGGGATTTCTCCCTAGGAAGCGTGC TGCACGTCACAGGGGAAAAGTGAAGTCATTCCCTAAGGATGACCCATCCAAGTCACCCAAGCTTACTGCCTTCTTGGGTT ACAAGGCTGGTATGACTCACATTGTCAGAGAGGTCGAGAAGCCAGGATCAAAGCTTCACAAGAAGGAGACTTGCGAGCCA GTTACAATCATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGCTATGTGAAAACTCCCCGTGGTATGCGAACATT GAACACTGTTTGGGCTCAGCATTTGAGTGAGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGG CTTTCTCCAAGTACTCCAAGCAGTTTGAGTCTGAAGAAGGGAAGAAAAATGTTCAGGCACAGTTGGAGAAAATTAAGAAG TATGCAACTGTTGTCCGTGTGTTGGCTCACACTCAGATCAGAAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCACATCAT GGAAATTCAGGTCAATGGTGGGACTGTGGCACAGAAGGTGGACTTTGCTTACAGTTTCTTCGAGAAACAGGTTCCTATTG ATGCTGTGTTCCAGAAGGATGAGATGATTGACATCATTGGGGTGACCAAAGGTAAGGGTTATGAGGGTGTTGTGACCCGT TGGGGTGTTACCCGTCTTCCTCGCAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCAGCAAG AGTTTCTTTCACTGTTGCCAGGGCTGGTCAAAATGGATACCATCACCGAACTGAGCTGAACAAGAAGATTTACAGGCTTG GCAAGGCTGGAGACGAGTCGCACTCAGCCATTACTGAGTTTGATAGGACTGAGAAGGAGATTACCCCAATGGGTGGATTC CCACACTACGGTATTGTGAAGGATGATTTCCTCATGATCAAAGGAGGCTGTGTTGGTCCCAAGAAAAGGGTTATCACATT GCGTCAATCCCTGCTTAAGCAGACTTCTCGTGTTGCTTTGGAGGAGATCAAACTCAAGTTTATCGACACCTCTTCAAAGT TTGGACATGGGCGCTTCCAGTCCACTCAAGAGAAGCAGAAGTTCTATGGACGCCTCAAAGCTTAA 

Protein sequence (LotjaGi5g1v0289400.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEP VTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKK YATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR WGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGF PHYGIVKDDFLMIKGGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRLKA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 44 44 -
PANTHER 6 394 389 5.9E-259
PANTHER 6 394 389 5.9E-259
Gene3D 6 278 273 4.1E-204
Pfam 6 375 370 3.2E-193
SUPERFAMILY 9 375 367 4.68E-112
Gene3D 49 390 342 4.1E-204
Gene3D 88 211 124 4.1E-204
ProSitePatterns 217 240 24 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0289400.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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