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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0289400 |
| Transcript ID | LotjaGi5g1v0289400.1 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein L3; TAIR: AT1G43170.1 ribosomal protein 1; Swiss-Prot: sp|P35684|RL3_ORYSJ 60S ribosomal protein L3; TrEMBL-Plants: tr|I1LDE9|I1LDE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60612051..60615481) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGCTCCAAGCTAGAAGGTCCATCCCAAACCCAACAAGAAACAAAAGCCCATAGAACTTTAGCAGCCCAGCCACAACA AATAAAATCAGAGAGAAATTAGGGTTTTAGCTCAGTTCCTGCAACTCAGGTCTTCACTCGCCGCTGCTGCAGGTTCTCTT CCAAATCTCATCTTCTCCACCATTTTCCCCCATTTTCTCACCTGCCATTGCTTCCTTCGTTGTCTTCATTATTTTCGTTT CAAGATTCTCAGTACGACAATCCATTTTTCAACCAAACTTGTTGATTCCGTGTTTTCTCTTGCATTTCTGATTCTTAACG CGATTATTATCAATTGTTGTGTTTAATGCATCATTCTGGAATCTCCATTGATTTGTATTTTTGTTTTGATTTTGAAGGAG AAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCCAGACATGGGTCACTGGGATTTCTCCCTAGGAAGCGTGCTGCAC GTCACAGGGGAAAAGGTTTGTTCTTTGTATCTGGGCATCTGTTGTTTCAATTGCCAAGTATTGCTGCTGTGAATTTGTGA AACAAAACTACGAGGATGTTATGTTGTAATTTTTTTGGTGAATGGATCCTCCTCATGTTTTTGCTTTAAATTGTTGATTA CAAACTTGCAACAATTTCCTTACACCCATTTCATGATGTTTTCCAATCAAATAGTGATATGTAGTCAAGTTTTTAAAATT CATATACAAGTGTTATTGTTTGAGTGGAGAACTTGATTGTGAGAATACAAGTGACTTGATCTATGTTTATTCCCTCATAT CAGAATCTGATTTTTTAACATTTGTAATTTTTACCTGTGCAGTGAAGTCATTCCCTAAGGATGACCCATCCAAGTCACCC AAGCTTACTGCCTTCTTGGGTTACAAGGCTGGTATGACTCACATTGTCAGAGAGGTCGAGAAGCCAGGATCAAGTGAGTC ACATTCGTATCAAATTTTCTTATCGTTCTCACTTAAATGTATCCTGTGGAAGTCAATATTGGTGCTGGTTTTTATTTCCT TCAAATTATGGGATGGAATGAGTAATTTTAGGGAAACAGATGTTTTGAAATACACTTGTTCATGTGCTCTTTCAGGTTAT GGATATAGCTCCTTCAGTTTTTTTTTTCTATGTAGAATGGTATTATTAAACTGCATGTTTTAGTCAATTTTGGTTGTGAA GTATATGTCAGTAATTATGCTTCATTCTTTTATTGTTGTAATGAACATTATAAGCCGATGTATGGTATCCATTTTTATTG TAAAATTACATTAACGCAATTCTTTTGCAACAGAGCTTCACAAGAAGGAGACTTGCGAGCCAGTTACAATCATTGAGACC CCTCCAATGGTTATTGTTGGTGTTGTGGGCTATGTGAAAACTCCCCGTGGTATGCGAACATTGAACACTGTTTGGGCTCA GCATTTGAGTGAGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCTCCAAGTACTCCA AGCAGTTTGAGTCTGAAGAAGGGAAGAAAAATGTTCAGGCACAGTTGGAGAAAATTAAGAAGTATGCAACTGTTGTCCGT GTGTTGGCTCACACTCAGGTACTTCCTATGACAAAGTGATTTCATATTCTGGGTGTTCTACGTTATGAAGGTTAACTATA CGTTTTATAAACGTTTATGTTTTTTGGGTGATGAGAATGATGAGATTCTTGTTCTTGTGCTAACGCAGTGCCATTTAATT TGGTGCAATGAGCGGCACTTTCCACACGAGATTTCTGACACCCTCTTGTTTTAATTTCTTTTTGATGTTTTTTGTGCTGT CAAGAAAAATATAGGGGCAAATGAAACTGTAATATTTTCTATGGCAAATGTTTTGGGTTTCTGTAGATCACCTGGCAATT CCAAATTCTTCCATTTGTGTTTTATCTCTCAATTTATCATTTCATGTTACATGATTTTAAATACTAATACCATTGTTAGC CAAATTCTAAATCACCTCCAATTATATTTATTTGGTGTATTTGGTATAAATTTCTAATATTATTGTATATCAATCTCACA GATCAGAAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCACATCATGGAAATTCAGGTCAATGGTGGGACTGTGGCACAGA AGGTGGACTTTGCTTACAGTTTCTTCGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACATC ATTGGGGTGACCAAAGGTAAGGGTTATGAGGGTGTTGTGACCCGTTGGGGTGTTACCCGTCTTCCTCGCAAGACTCACAG GGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCAGCAAGAGTTTCTTTCACTGTTGCCAGGGCTGGTCAAAATG GATACCATCACCGAACTGAGCTGAACAAGAAGATTTACAGGCTTGGCAAGGCTGGAGACGAGTCGCACTCAGCCATTACT GAGTTTGATAGGTGAGAAACTTGCTGATTATTTATTATTGCATGCAATAAATCACTGGACAGCAAGAAATATGCTGATTG TTTGTTTCACAGTAGACTATCATTCAGGTTCAAACTAATCCGACTTATTTTCTGAACCAGGACTGAGAAGGAGATTACCC CAATGGGTGGATTCCCACACTACGGTATTGTGAAGGATGATTTCCTCATGATCAAAGGAGGCTGTGTTGGTCCCAAGAAA AGGGTTATCACATTGCGTCAATCCCTGCTTAAGCAGACTTCTCGTGTTGCTTTGGAGGAGATCAAACTCAAGTTTATCGA CACCTCTTCAAAGTTTGGACATGGGCGCTTCCAGTCCACTCAAGAGAAGCAGAAGTTCTATGGACGCCTCAAAGCTTAAT TATGTTATTTTGATGGAAATCTGGAACGTAATTTTAAAATTATATTTGATTACCATGTGTTTTGAACTTGTAAGTGTTTT CTCCTGTCATTTGATACATCATGGATTCTCTCGTTTGTAGTTGAGCTTCTGAACCTTCGTTTCTCAGGAGTTTTGAGTTG TACTCAAATTTTGTTTCTAATGTTCATTTTTACTTCATCTATTCGTTTCTGTTGTAGTTTGCAAAGTATATTCTCTATTA TGCTTTGATTTTAGGGATTCTTAACATGCTTTTATCACGGAATACGGCAACTTGTTCCCCTTACCTTTTTCTAATTTAAA CTAAAATTCTAAACGCGATAGGTTTAGAAATATTTTGACTAACTAGTTGGGTAAATTTCTTGGAAATAGATTTTTTTGTT GAATTTGACATTTGGTTCTTTGAAATCATGCATGAAATTTTGTGAGTCTTCGTTGAATCTTGCTTATAGAAGTTTGTCTT TTACTTCAAATCCAAATTTTTGATTAGAGACTTTAACAATTTGGCAGGTAAGTTACATCACATGATAAGCA
CDS sequence (LotjaGi5g1v0289400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCACAGGAAGTTCGAGCACCCCAGACATGGGTCACTGGGATTTCTCCCTAGGAAGCGTGCTGCACGTCACAGGGG AAAAGTGAAGTCATTCCCTAAGGATGACCCATCCAAGTCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCTGGTATGA CTCACATTGTCAGAGAGGTCGAGAAGCCAGGATCAAAGCTTCACAAGAAGGAGACTTGCGAGCCAGTTACAATCATTGAG ACCCCTCCAATGGTTATTGTTGGTGTTGTGGGCTATGTGAAAACTCCCCGTGGTATGCGAACATTGAACACTGTTTGGGC TCAGCATTTGAGTGAGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCTCCAAGTACT CCAAGCAGTTTGAGTCTGAAGAAGGGAAGAAAAATGTTCAGGCACAGTTGGAGAAAATTAAGAAGTATGCAACTGTTGTC CGTGTGTTGGCTCACACTCAGATCAGAAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCACATCATGGAAATTCAGGTCAA TGGTGGGACTGTGGCACAGAAGGTGGACTTTGCTTACAGTTTCTTCGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGA AGGATGAGATGATTGACATCATTGGGGTGACCAAAGGTAAGGGTTATGAGGGTGTTGTGACCCGTTGGGGTGTTACCCGT CTTCCTCGCAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCAGCAAGAGTTTCTTTCACTGT TGCCAGGGCTGGTCAAAATGGATACCATCACCGAACTGAGCTGAACAAGAAGATTTACAGGCTTGGCAAGGCTGGAGACG AGTCGCACTCAGCCATTACTGAGTTTGATAGGACTGAGAAGGAGATTACCCCAATGGGTGGATTCCCACACTACGGTATT GTGAAGGATGATTTCCTCATGATCAAAGGAGGCTGTGTTGGTCCCAAGAAAAGGGTTATCACATTGCGTCAATCCCTGCT TAAGCAGACTTCTCGTGTTGCTTTGGAGGAGATCAAACTCAAGTTTATCGACACCTCTTCAAAGTTTGGACATGGGCGCT TCCAGTCCACTCAAGAGAAGCAGAAGTTCTATGGACGCCTCAAAGCTTAA
Protein sequence (LotjaGi5g1v0289400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIE TPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKKYATVV RVLAHTQIRKMKGLKQKKAHIMEIQVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGI VKDDFLMIKGGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRLKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 273 | 273 | 3.9E-204 | – | |
| PANTHER | 1 | 389 | 389 | 5.6E-259 | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| Pfam | 1 | 370 | 370 | 3.0E-193 | ||
| PANTHER | 1 | 389 | 389 | 5.6E-259 | – | |
| SUPERFAMILY | 4 | 370 | 367 | 4.41E-112 | ||
| Gene3D | 44 | 385 | 342 | 3.9E-204 | – | |
| Gene3D | 83 | 206 | 124 | 3.9E-204 | – | |
| ProSitePatterns | 212 | 235 | 24 | - | ||
| Coils | 384 | 389 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0289400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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