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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019987
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.400s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0314309.1
n.a. PREDICTED: DNA ligase 1-like [Cicer arietinum] gi|502129568|ref|XP_004500348.1| chr0 164028802 164035501 +
2 domain predictions
1 GO term
Lj0g3v0314309.2
n.a. PREDICTED: DNA ligase 1-like [Cicer arietinum] gi|502129568|ref|XP_004500348.1| chr0 164028802 164035501 +
3 domain predictions
1 GO term
Lj1g3v2036760.1
n.a. PREDICTED: GTP-binding protein At2g22870-like [Glycine max] gi|356507873|ref|XP_003522687.1| chr1 24106096 24109452 +
3 domain predictions
1 GO term
Lj4g3v0451300.2
n.a. PREDICTED: GTP-binding protein At2g22870-like [Cicer arietinum] gi|502142648|ref|XP_004505058.1| chr4 6704490 6706335 -
3 domain predictions
1 GO term
LotjaGi1g1v0399300.1
n.a. GTP-binding protein; TAIR: AT5G11480.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O81004|Y2287_ARATH GTP-binding protein At2g22870; TrEMBL-Plants: tr|A0A1J7G841|A0A1J7G841_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0399300 LjG1.1_chr1 88647776 88652146 -
3 domain predictions
1 GO term
LotjaGi4g1v0056500.1
n.a. GTP-binding protein; TAIR: AT2G22870.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O81004|Y2287_ARATH GTP-binding protein At2g22870; TrEMBL-Plants: tr|A0A072UYX7|A0A072UYX7_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi4g1v0056500 LjG1.1_chr4 6779984 6784271 -
3 domain predictions
1 GO term
LotjaGi6g1v0104400.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT5G58370.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q1GJX8|ENGB_RUEST Probable GTP-binding protein EngB; TrEMBL-Plants: tr|A0A151UA06|A0A151UA06_CAJCA Putative GTP-binding protein engB; Found in the gene: LotjaGi6g1v0104400 LjG1.1_chr6 22983446 22990766 +
3 domain predictions
1 GO term
LotjaGi6g1v0104400.2
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT5G58370.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q1GJX8|ENGB_RUEST Probable GTP-binding protein EngB; TrEMBL-Plants: tr|A0A151UA06|A0A151UA06_CAJCA Putative GTP-binding protein engB; Found in the gene: LotjaGi6g1v0104400 LjG1.1_chr6 22983446 22990766 +
3 domain predictions
1 GO term