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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0056500 |
| Transcript ID | LotjaGi4g1v0056500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTP-binding protein; TAIR: AT2G22870.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O81004|Y2287_ARATH GTP-binding protein At2g22870; TrEMBL-Plants: tr|A0A072UYX7|A0A072UYX7_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi4g1v0056500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6779984..6784271) extracted from Lotus japonicus Gifu genome v1.2.
CTCGAAAGCTTGACGAACGGAAAAAACCATTTATTCTTGTTAATAGTAAAAGGAGTAAAGTGGTTTTAAAATTATGAATA AAAACCCAACACCATCCCCATTCCACAATACCCCTAATCCATTTCCGGCAGTAGGTACGACACGATGACGGTGGTGCTCC GAAGAGGAGCGGTGGCGCTCACCTTCCTCATCCCCTCTCGTTCTTCATTCTCTTCTTCCTCTTCCTCTCTTTCCATTCCC AAATCCACCACCACCACCCTTTCCCTCCTCTCCTTCCGCCGCAACCATTCAACCCCAGCAGCAGCTTCCAAAACCAGTAG CAGCCCCTCTTCACTCCCTCTCTCCGTCGAACCCCGCTTCCTCTTCATCCCCCCTGGTATCGAACCCGACGAGGTCACCG ACTCCATGATCCTTCCCGCTTCCAACATCGTCGTCGGACCCTACGCCGGCGACTCCCGCATCAAGGACGTCGAGTTCGTC AAGAGCAGCCCCCGTGCTAGAGACTGCCCCAAAGATGACCGGCCTGAATTCGCCGTGCTCGGTCGGTCCAATGTTGGCAA GTCTTCCCTCATCAATTCCCTTGTTCGGAAGAAAGAGCTTGCTCTCACTTCCAAGAGACCAGGTAATGTGGAAACTTTGA ATTCATAGTAGCTGCTTCTGCTATTGCTTTTGCTTTTGCTTTGAGTTTGTGTAATGTGTTTTTGAGTGCTTGCAGGGAAG ACACAGCTTATCAATCACTTCTTGGTGAATAAAAGCTGGTACCTTGTGGACTTGCCTGGTTATGGGTAAGTGGCTGAGTT TCTGAAATGCCAATTTATGTTTCTATGGTTCTGTTTGATAGAGGGATTTTACTCTGGTGTGGCAAAAAGATTATATCACA AAATTTGTAAAATTTTAGAATATTTATGTTACATAGTGATATTGGGTGTTGAAAGTATATAAGGGACAATTTGTTGATTG TTAAGATCCCGTGTCGACTAGAGTTATGGTCAAATCAGTTGAGTGCAACAAGGATAGACTTTCATCTCAATTCATGGTAA CTCAAGTTGTGTGCTAATGTCTGTTTGCACTGGTGCTAGCGGAGATGCAAACATAGCCTATTACAATCTTTGCCTTACTA GCTTACTTTTAGAGGGCGGGGGAGGGGTGGGCAGCCTTACCTTGTATTTGTTAGAGGCTAATTGTATAGCTTGAACTTGT GATATCTTCACTTGGCAAAAACTCTAGCAAGGGGACCAAAGACCCATTGAGTGATGGGAGTGTATAAACAAGTTGCAATT GTTTTAGTGATCCAATCACATTTTGGGAAAATCAAAATTTTTGAAAAAGAAATAAACAAACTACATATAGTTATTAGAAA AACTCTAAACCTTGTCATAAACATAGATCTCTAGTGAGGAGATAATCTGACTCCTTGTTTACTTAATAAAGCTGATTGAT GCAGGATTTAGGCATGGGTGTGTTATAAAACAGTGGAGTTTAGTATCCTCCATGTTTTGAAATTTCTTGAATTGGTTAAT AATAACCAATGTTTCTATCGAAATGCTAAGTCACAATGTTGGATGTTTACATGTATCTACCAATTTCCATGCTTGGTCTA TGTTTTCCTCATTGATATTCTTTCCTGTATTTTTCTGGATTGCAGAGGACTAAGTTTAGGGTCAGTGATTTGTGGAGTTA CTGTAAACAATTATTTGATATTTTTTTCTTTTCCTTCTGTTTATGCAGCTTTGCTAAAGCATCTGAAGCTGCTAAAACGG ATTGGGCCTCATTTACAAAAGGGTACTTTTTGAACCGAAATACTCTGGTGGCTGTCTTACTTCTCATTGATGCAAGTGTT CCGCCCCAAAGAATTGACTTGGATTGTGCTAACTGGCTTGGACGCAATAATGTATGATGCTTTTTATATTGAGTCCCTGC AGGAATGTTGTTAGGGTGCTGTAAGAACTAACAAGTCTAATATTCCACTGAATTTTTGCCAATTGCAGATACCTGTTACT TTTGTTTTCACAAAATGCGACAAAATGAAGGTTGCAAAAGGGAAACGGCCAGATGAGAACATAAAGGAATTTCAAGAGAT AATCAAACAAAACTTCAAGCAACATCCGCCATGGATTATGACCAGCAGTGTCACTGGATTGGGTAGAGATGATCTTCTCT TGCATGTATCTCAGCTGAGAAACTACTGGGATCAATAGGGAGAAAATATTAAACTTAAGTAAGGTGACTGTCTACAAGAA GGACATGCCATGCAGGAGCAAAGTTCAAATTACAAAAGATGCAACTGCATAGAAGAATCATGTAGAAAGGCTATGGGTTG AGCTGTATCACTCATAGTCTTTCAGCTGGATCTTTCATCAGGATCTTTGTTCACCTCAAACTTCAACCTGATATATACGG TATCTAACATGAGAGTGAAGTTTGAGTTTGTTTCTGGATACTGGAATTTTCATATGCTGTCATGTTTTGTGCCTATGGGA GTAAACTAACACAGATAGTCTTGTATGCTTTCAACTGCAAAGCCTATAATTTTGTGCTGGCTTTTATTTATCTTTTGTTT CAAGAGTAAATATTTAGGCACACCATTTCCTTGACTTTTATCTAAGAATTTCTGGAGGAAAATGCAACTTTTGCAAGACT TGAATTTATGTATTTATTGAAAGTGAGATAAATAAAGCTGCCGGAAGTGTGAAAACTCCTCTATTGATTTCCAGATTAAG TTTTATAAGAATGAATTCCTCCTAGATTATTAACATTTCAGTTTGTCCACTGAATTTGATTATTGCGCCCTGCACATACG TACAAATGATTTCATCTCTGCACTGCAGTGTCCATTCCTTTATTTTATTGTTGGCTGTTTACAGGGTACCGAATCTCGAA TCCATTTTAGTCCACATAAGTTGAAGCATAATAGAGCATTGTTTTAGTTCCTGGCATGTCAACATATTCAATTACTAGGC TGTTACACTATTTGGCACCCCTCGTCCAGTGGCTCCACATCCTGAGCTTGGCATAAGCTGTTCATACGGTGAAACCCCAA CACCGCACCTGTTCCTAAGTTTTGGATCAGTGTTTCTTTTCTCAATCTCCATCTCAATATTTTTCATGTCCATTGAAAAT TGCCAAAATGCCTCAATGATCTCAGGGTCTCCTGACCAAGAAGAGATGTCATTTCTGTCTCCTATATATTCCTCATCAGG GGAGTGTGCTGAACCTATGTTGATCACAGCCATGAACCTTGTTGCCTGAAATAAACTTGGCATTGATGACAGGAAGTATC TCTGTGGATCCATCATAAAAACTGAGTAATCAGAATCCTCCTCATTGGGAAGTAGTTTTCGCATTAATGGTGAACGGATT GGAACATATCCGCCATAGGGGTATTGACTAAAGTTCAAGACAGCATGCTGCGCTGTCACAATCCAGATAATGGCGGTAAG CATTGAGATGAGATCCTTATTGGTGGCAAGTTTTGGCCACCAACTAGCATTTTTATGATCAGGGTGTCCAAGATTGATGT ATTCTTTGTACCATGATTGGAGTTCATTGTCAGCAGAAACATCATTGGAACCTTTGTAGTAATGGTTCACATAGGTTTGA ACCAACTTCTCTATGCTGAACCATATGAGGAGTCCATCAACTGCATAAGGATAATCTTCAATAAGAAGTCTAATGCCATG AGGCTGGGTTGCATCCAGAACTGCTAAACCTCTGAAAGAATTGAAATCAGTAGATCTTGTTAATTGCCATCCATGGCTTG GTACTTCGCAGAGGACAAAGCTAAATAAGGAGAGATATATGAAGTTTGTTTCAATCGGGTAAGAACCAAAATACAGAATT ACAAGTAGATTGCTTATTGTATAATCAAGTGCATATCCAATATATTGAAACAGAAATTTAATAGTACACGCACCATATAT AGTGCTCCAGTTAGTACTGTTAGTGTAAGATTTAAGAGGCTAGCAAAATAAGTCCTACATATACGTTGCACTGGTTAAGA AGGCTGTAAATTTTATTTACCTTCTTATAAGATCAGCAGGAAGGCCTTCCATGTCAAAACGCCACCAGTCTTTGTAGGCA GCACAAGTAATTTGCATGCAGTATTTCCCAGGAGTGAAGTTTGCCTCAATGTTACCTTCGGCATTGATGAGTACCTCACG AGTTATTGAATTTGTCTTGAGTGTGTATCGCATATGGGGATGTAGAAGCTTGAAAATAGGATGCATCACACTTAGTTGCC GATGGGCGGCTATTATTAATGGTTCCATGCATGCATGTATTCTTAACC
CDS sequence (LotjaGi4g1v0056500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGTGGTGCTCCGAAGAGGAGCGGTGGCGCTCACCTTCCTCATCCCCTCTCGTTCTTCATTCTCTTCTTCCTCTTC CTCTCTTTCCATTCCCAAATCCACCACCACCACCCTTTCCCTCCTCTCCTTCCGCCGCAACCATTCAACCCCAGCAGCAG CTTCCAAAACCAGTAGCAGCCCCTCTTCACTCCCTCTCTCCGTCGAACCCCGCTTCCTCTTCATCCCCCCTGGTATCGAA CCCGACGAGGTCACCGACTCCATGATCCTTCCCGCTTCCAACATCGTCGTCGGACCCTACGCCGGCGACTCCCGCATCAA GGACGTCGAGTTCGTCAAGAGCAGCCCCCGTGCTAGAGACTGCCCCAAAGATGACCGGCCTGAATTCGCCGTGCTCGGTC GGTCCAATGTTGGCAAGTCTTCCCTCATCAATTCCCTTGTTCGGAAGAAAGAGCTTGCTCTCACTTCCAAGAGACCAGGG AAGACACAGCTTATCAATCACTTCTTGGTGAATAAAAGCTGGTACCTTGTGGACTTGCCTGGTTATGGCTTTGCTAAAGC ATCTGAAGCTGCTAAAACGGATTGGGCCTCATTTACAAAAGGGTACTTTTTGAACCGAAATACTCTGGTGGCTGTCTTAC TTCTCATTGATGCAAGTGTTCCGCCCCAAAGAATTGACTTGGATTGTGCTAACTGGCTTGGACGCAATAATATACCTGTT ACTTTTGTTTTCACAAAATGCGACAAAATGAAGGTTGCAAAAGGGAAACGGCCAGATGAGAACATAAAGGAATTTCAAGA GATAATCAAACAAAACTTCAAGCAACATCCGCCATGGATTATGACCAGCAGTGTCACTGGATTGGGTAGAGATGATCTTC TCTTGCATGTATCTCAGCTGAGAAACTACTGGGATCAATAG
Protein sequence (LotjaGi4g1v0056500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVVLRRGAVALTFLIPSRSSFSSSSSSLSIPKSTTTTLSLLSFRRNHSTPAAASKTSSSPSSLPLSVEPRFLFIPPGIE PDEVTDSMILPASNIVVGPYAGDSRIKDVEFVKSSPRARDCPKDDRPEFAVLGRSNVGKSSLINSLVRKKELALTSKRPG KTQLINHFLVNKSWYLVDLPGYGFAKASEAAKTDWASFTKGYFLNRNTLVAVLLLIDASVPPQRIDLDCANWLGRNNIPV TFVFTKCDKMKVAKGKRPDENIKEFQEIIKQNFKQHPPWIMTSSVTGLGRDDLLLHVSQLRNYWDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 16 | 9 | - | – | |
| Phobius | 17 | 28 | 12 | - | – | |
| PANTHER | 26 | 304 | 279 | 2.8E-109 | – | |
| PANTHER | 26 | 304 | 279 | 2.8E-109 | – | |
| Phobius | 29 | 306 | 278 | - | – | |
| Gene3D | 103 | 303 | 201 | 4.8E-52 | – | |
| TIGRFAM | 110 | 294 | 185 | 1.2E-58 | ||
| Hamap | 114 | 301 | 188 | 23.706 | ||
| SUPERFAMILY | 114 | 299 | 186 | 2.74E-37 | ||
| ProSiteProfiles | 125 | 303 | 179 | 35.864 | ||
| CDD | 128 | 300 | 173 | 6.33865E-71 | ||
| Pfam | 129 | 246 | 118 | 8.6E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0056500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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