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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR020070
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.834s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2906240.1
n.a. PREDICTED: 50S ribosomal protein L9-like [Cicer arietinum] gi|502118242|ref|XP_004496170.1| chr3 36132370 36134179 -
3 domain predictions
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Lj3g3v2908510.1
n.a. PREDICTED: 50S ribosomal protein L9-like [Glycine max] gi|356571485|ref|XP_003553907.1| chr3 36223582 36227766 -
3 domain predictions
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Lj3g3v3032110.1
n.a. Os02g0822600 [Oryza sativa Japonica Group] gi|297600141|ref|NP_001048561.2| chr3 37924436 37926462 +
4 domain predictions
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Lj3g3v3032110.2
n.a. Ribosomal protein L9 isoform 1 [Theobroma cacao] gi|508786424|gb|EOY33680.1| chr3 37924436 37927390 +
4 domain predictions
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LotjaGi3g1v0466900.1
n.a. 50S ribosomal protein L9; TAIR: AT5G53070.1 Ribosomal protein L9/RNase H1; Swiss-Prot: sp|Q01QR6|RL9_SOLUE 50S ribosomal protein L9; TrEMBL-Plants: tr|I3S3Y3|I3S3Y3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0466900 LjG1.1_chr3 88228491 88237210 -
2 domain predictions
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LotjaGi3g1v0466900.2
n.a. 50S ribosomal protein L9; TAIR: AT5G53070.1 Ribosomal protein L9/RNase H1; Swiss-Prot: sp|Q01QR6|RL9_SOLUE 50S ribosomal protein L9; TrEMBL-Plants: tr|I3S3Y3|I3S3Y3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0466900 LjG1.1_chr3 88229621 88240263 -
2 domain predictions
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LotjaGi3g1v0466900.3
n.a. 50S ribosomal protein L9; TAIR: AT5G53070.1 Ribosomal protein L9/RNase H1; Swiss-Prot: sp|Q01QR6|RL9_SOLUE 50S ribosomal protein L9; TrEMBL-Plants: tr|I3S3Y3|I3S3Y3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0466900 LjG1.1_chr3 88230072 88233381 -
2 domain predictions
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LotjaGi3g1v0484300.1
n.a. 50S ribosomal protein L9; TAIR: AT3G44890.1 ribosomal protein L9; Swiss-Prot: sp|P11894|RK9_PEA 50S ribosomal protein L9, chloroplastic; TrEMBL-Plants: tr|C6T1L0|C6T1L0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0484300 LjG1.1_chr3 90152096 90155380 +
3 domain predictions
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