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LotjaGi3g1v0466900.1

Overview

Field Value
Gene ID LotjaGi3g1v0466900
Transcript ID LotjaGi3g1v0466900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 50S ribosomal protein L9; TAIR: AT5G53070.1 Ribosomal protein L9/RNase H1; Swiss-Prot: sp|Q01QR6|RL9_SOLUE 50S ribosomal protein L9; TrEMBL-Plants: tr|I3S3Y3|I3S3Y3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0466900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:88228491..88237210) extracted from Lotus japonicus Gifu genome v1.2.

AAGTTTCAAAAAAAAAAAACTTCTTAAATGTTTTTGAATATTTGACATTAGCAATTAACCCATTCAAAACCAAAGCTGGA TCAGATGTACTCAATGCAAAAACTCGCCCAACATGCTCCAAACCTCGTCACTTACAATGTGCTGATAATTTAATTAAATG AAAAGCTGAAAGTCATAAAACTCTGTAGTCTTGAAAGACTTCATTCACTATTTTCCGAAGCACAAAAAAAACAAAGACTT CATTGACCTAGTCGTTTGCCACACTTCATAAACTTTATGTACCAAAAAAAATTCAAATAAACTTTTCTAAACACACTAAA TGCCACAATTTAGCCTCATTTTACTAAATCTGCATACAGATGAGCTTGAAACAATCGTCTGGTCTGACCTAAAGGTAACC CCATCAGAGATCCCCAGATCACTGAGTCAACGGTTTGACAGCGGTTAAAAGTTTGAAAACCCCCTTGTCTAATTTTAAAA ACTGAACATGAAAATTACTTTTCGAATATGAAAATAAGAAGAATGAAAATGAGAAAACATTTTAAAGAGCACATACCCTT AAACTTTAGCAATATAGTGAACACAAGGCAATTTTCAAATAAGTACCGGTACAAGAAACGATAGAAATTGAAAGCAATCA GTTAATGAACTTTACAAGAACCAGATCAAACCAGAGAATTTACAATTAAGCTGACTTCTTCATAATGGTCATTTTTCATT AAGCTCTATTCACATGATCGTGCTATGATTTATGAATTATTTCAGATCATCATCCCAAATGTGTTCTCCCCACTGTAAGT CATATAAAGGAATCCATCTTCATCCTTATTTTCCTCATAAATTGCAGACATCATGGCCGCTGCATGAACAAAAACCACAG CTCAGTTCACAAATCAACTACAGTTAAAACTACAATAAATAACAAAATTTTCACATATATACCACATACACATGAACAAA ATCCACATATATTACCAGTTGGGGGCAAAATGTTCTTGACAAAAATGAAGATGGCCTTCTCAGGACTCAGCTTGATTCTC TTACGCACCACATACACAAATTGGCCAACAGTTAAATCAGCAGGAACAAGATACCTATATATATCCAAAATGGAACGATA ATCAATAAAGAAAATACAAGGGATGAAAGATGAAAAATGTATCCAGTATCCACACAACACAATAGAACATTCCGATAATT GTCAGTGTAATAAGAATTTCACGCATCCAATATTGAAGTCAAAAGAGGTAAATGAAAACATTGAGCATGTCGAAATGCCT ATATCTATCCTAGACATCCATCCACCAGCCAGGTTACTTAGTGTACTAAAAATATGTTTGGCTTACGGTCTTACACCCCA GACATACAGTCATACGTCCCAAAGGACATTTTCACATTGGCTGAAACTTATATATACACTAAGTTTCCAAGGTCATTTTT TTCTTTTGATTTTAGAAGGTGAGAAGACAGTGAGTTATGAGTTATACCTCCTACGTTTTGCAAGAATGTACCACAAAAGC CAAATGCCATTGGAGACTTAACTACTTACTAAAATAACACATGGCTCCAACCCAAACAAGTACATAATGCAGATGCACAC AGATTTTGGGACATGAAGTCTCAACTTTCTGATACATTCAATTATTAACACCCAAGTCTTAACAAAAACCTGTTCTCACT TTATGATCAAACTAGACTGTTTCTACAGTTTCCATTCTATTTACATTGTTAAAAACCAAGAGCATTAAGGTTTCGTCTAC ATGCATAAATAGAAAATACACACGACAGGTCTTAGCCAGCGACAAACCATGTCTCTACATGGATCACACAACACTATAAT TTCTCATCATGTATTAAGTTCAAAGTTGAACCATAAGCAACCATAAGTGTCTACATTTTTCAAATTTCAAAGTAAAGCTA CCATACATTCAAAACTTCAACCAGACATAGCAGGACAAGTTTCATGCAGGGAAATATTCACGAAACAAGTAATAATAGTT ATAACGAAAATTGGATTAAATAAACTGAACCAATATTTGCAATATCACTTCCCAAAGAGTAGAAGAAACTAACTTTTTCT TATCAATTTCAGGAACATCACTCTTCTCTGCCCTTTCAACAATAACCTACATCACAAGATCAACCAAAATAATAAGCATC CAATGATATTAAAATGGCACATGCACACAGACAGCACAGCAGAAAGCAGGTCTTACCGGAATTCTGTCAGGATACTTCTC TCTTATGCGAGCTGCTTCAGCCTGTCTCCTTTCTGGCATGTTAATGGTTGCACATATTAGAGAAGATAAATGTTGGACCT AAATCACCCAATAGGTGAACTAAATACAAGTTTACATGCACTTAGGAAAGTATAATTAAGTGCTATAACATAGGTCATTG TTTATACTAAACTCTAAACTAAATATAAAGAGCAAAAATATGTAGTTAAGACAAGACAATGGCATTTGATAGAGTAAAAA TTTCTGGTAAAAATTCAATTTTCATGGAAGAAGTGATAATGGTGCTTAAAAATACAAACTTTACATCATAGTTAAACACC CAAATAAAAAAAAAAATAGAAACCAAACCCTAGACAGTTAGATTACTACCCGAGAATCCCAAAAGCATCAAGTTTGATCA ACTCATAAAACTGCACTATACAGTAACAATTGAACAAAAAATTGGTAAATTAAGAGAGGAGCGAACCAAGTGGGTGTTCC ATCTTGAATGAGCTCTTAGCCATGGCGATGATTCTGCAGCACCAATTATGGAATTAGGGTTTGGTACGAGGGTAGCGATG AATTGAGGAGCGAAAACGATTGACGAATAAAAAGGAAAAAGGATCGCAATTAGAATTGAAGAGTAGATGTTGCTTACCAG AGAGAGAGAGAGAGGAGAGCGAAAGAGAGAAGAAGAAGATGTGTTGCTTGCTTGATTGATCAGATAAGAAGATGAAGAAG AAACCTCCGTCAAAGAAAAAGGAAGTTTATTTATTTTTTTTATTTTTTTTTTATTTTTTTTTTTATTTTTATTTTTATTT TTATATTTTTATATGAAGGCGTGCGTGTCAAGAACCCCCATCCATTGACACGTGCCGGCCAAGTTTTTTTCTTTATGTAT ATGTGATGTGAATGTGAAAGTGAAAGTGAAAGACAAGTCCAACCCGACCCAACAAAAAGCCCTTGCTCCATCAGCCCACC ACCGTTGTTGCCTTCTCTCCCTCAAACTCAAATCAAATCTCCATCTTCTTCTTCCTCAATCCTCATCAACCAACAACAAG GTACGAGCAAACATGCAAGCAATCTGAACCTTCATTGCCCTTTTTCACGATCTCTCTCTGTCTCTGTATATGCTTAGATT TTTTTAATTTATTTTTGTGGGAGAGCTCTAAGTCTCATGAACACCTAGCATACTACTATATTCATTCTTATTGTCTCTGT TCAGTTACCCCACAGGTACACAAGTTAGGGATTGAAGACTCATTACAATAATACATAATATTCTTTTATATTCCAATTCT ATTAGAGATCTACAGAGTATAAGTAATAGGAGGGAATAAATCGTTAAGGGTCTTTGGTTTTGGTCCTTTTGGAGTAAAAT ATGGGGAGGAGAGCCCAAATCTCTCAAACACTTGGAGGAATCTGCATATACATATTTTCGTATCTTTTTTCTTGTATCTC TTATGTATCTCATTTCTGTCTATAAACTTTCCTTTTCTATCCTACTTTTTGATCCATTTCCATCTATTCGAAGAAATGGA ATTTGTTGGTTTGATACTGATAATTGTTTGTTTTCAATCTTGACAGAGAAAAGTTGTGACTGAATCTGAATGGGTTATCT TCAATATGGAAGACTTGGTGTTAGGCAGATCATCAGATTTAGAGATTCCAGTTCTAATAGTGCTGTCGTAAACCCACTTC TGTATGCGTCTCAAGGACTTCGATACAACAGGAAGCTCCAAGTCATCCTTACAACTGTAATTATCTATCTTGACTCCTAA TGTTTAATTACTGGGATAAAATTTTATTCAAATATCTGATATTTTCAATTTCTAATTTATAGGACATAGATAAGCTTGGA AAGGCAGGCGATACGGTCAAGGTTGCTCCTGGATATTTTCGCAACCACCTAATGCCCAAGCTCCTCGCTGTCCCTAACAT TGATAAGTTTGCTTATCTCCTCACTGAGCAGCGCAAGGTTTTTCATCCTTTCATTAGTCTCATTTTACACATCTATGCTA TTGGTTGTTCAATGCCATTGATCTCTGTTTCTTATTCATCTATGCTATCTACCACTTTCAGTTCTCTGCATTTTTCTATC TTCTAGAATAACTTTTTTAAGTTCTTGATATGACAATAGTGCATCCTTTTCCTTTACTTTTTGTGTTTATCTGAATGTGG GCGCAGCCCATATTGTCAACATTGCTTGGCACATAAACATTTGCATACTCACATAGCCAGTCTTCATAACTTACTCTGTC TTCTACAATTGTTGAGACTTCAGATTTATCAACCTACTGAAGAAGAAAAACAAGAAGACGTTACTGTAGTTAAAGAGTCA AAGGAAGATCTGATGAAAGAGTATGAAGCAGCCGCACTTCGTCTTGATAAGGCTAAGCTGGTTTGTAGCTTACTCTTCAA AGCTTTTCATTTCTGTTTGGAACTATTTCTCCTATCCTTTTTGGGGAAATTATTTGCCTTCTCAAATAGTTGAACTGGTG ACGATTAATCATATATTTTAAATATTAATGATGAGTTACGATCCACTGACAATAGGTTTAAGTGTTGAACAGTTATATCA TCGAGTAACTTTTTGTAGAATTCAGAGTTAGGTAAACCGGCAATTGAACCATGTTAAATTCTCTTGATGATCATGTATTC AAAGTTTTAGATAATTTAGGTTTTCATTGATATGTAATCTAATAGAATTTTGTTTATATATTTTAAGTAGCATATTATAT GTTAAAATATAGTGGTGTGGTGGAATATAAAGTAGTTTTAGATTTGTATGAAATTTTATAAAGTTGATCTACTTCCTGAG AACTTTCAATTCAACAATAAAAATTATCAGGTGGTGTAAGCATACCGAGACTTACATTTGATGGTATTGGATCTTGACTC TTATATAATATGTTAAGTAGTAAACTAATATCTAAGTTAGATAAAAATTTAACTTGCCATTTTGGTTTGGTTTTCAAAAC TATGACTCTGATATACTCCCCAAGATTGTTTCTGTTAGAGTGGTATAATAGAAACATGAGTAGTGCTAGCAACACTCACT CTAACACTCTATTTTCAACAATCTTTGATTGGTTGAAATTCATATGGATCCCACTAAATTGGCAGTGGGGCCCCATATTT TTATTGGATCCCACATGAATTTTAACGAATTAATGAGTGTTAAAGTCAGTGTTGCTAGCATTTTTCTAGAAACATTTACT TGATATTTTGATAGTCTTTCATGTCAAAACTCACCCATTAATATTTGTTATTTTAATATGAATTGAATGTGATCATCTAA TAGGTCTTGCGGAGGTTAATTGATGTTAAAAAAGCTAAGGCACGTGCATCAAAAGATGAACCCTTGGAAATACGATTACC TGTGACAAAAGAAGTACTTGTGGCTGAGGTAATATTTTTTCTTCTTAATTTTAATGTGTTCTTCGTTGTAACTAACAAAC AAATTTAGAAATAAGTATATAGTGTGTTAAAAAGAAATACTTGCAAGTTGCAACTAGTATTTGATGCTTCAGGAGAAACT TTCTTGGCCTGTTGGCCATGTGATTTGCTTGTAGATTTAGATTTCAGAGAAACAATCATCCAATCTTGTGCAAATACTAC TTAAGGAAATGAACTTCCCAAATTTAGTGATAGTATGTAATTTCATTTGGAAAGAAATACAAGTATGGAAAAGCAATATG AAACCACATTATAAATCTGTCAATTCTCAGAACTGAGATTCTAAACAACACAGTAGCTGAATGCGCTGTGAATAACTTTT TCTACGCCCTATTGCGAATAACTTTTTCTGCGCTCTATCCCCTCTTCTTCTCGCTCTTTTTCATTTCCTATAACTAATTC TTCCCTCTATGTCTTCATCATGTGTCCCCTCGTACTGTGCCAAATTTTAGGCTTATTAACTTGGGTTACCAATTAGCTGA ATTACCTCATATTCGAAGGAAATTAAGTGTGGGGTTGCTGACGGAGGAATGAGGTATGCGAGTCCAAATTCAGTGATCCA TCAAGCTAGGTCAACTTTTCCTTTTCATATATAAACCCCAACACAAGCTGGTTTCAGCGAAGCAGCTGTACCAGCAGCTC GATTTCACCTTTCCCAACCCAATTTCTTCAATGGAGGTTCCTGCCAAGTGAAAATGTGTAGTGGAAGTTTGTGTCATTTG CTAATGTGCTTTTCTTGCTTTTATTCTTTGAAACTTGAAATACATAATGATTCATATTAGAATAGGTTGAGAACTTTCAT AATATTATTTTATACATTACAATATTTAAGAGTCCTTAGATTAATTCTTTAGAATGTTTTCCATATTTCATGATTTGTTT TCTTATTTAATTAGTGTTTGGAGTTTAATGTTCCTATCAATAGGGGTTAAGGTATGTCTTCTAATTACATCAAATCAATT AATTTCAGATTTTCCAGTCACTATGTTTTACTTGTTTTTCTTTTCCTTCCCATAAACATGCCATTGTGCTGTTTTGAATA CAATGACTTGGCCTATAAAAAAAATGTAGGATGTAAGCTATTTTCATAAAATTAACCAAACACTTGTTGCTTATAGGTAG GTTATAAGCTATTTTCAAGGTTTGGTTAAGCCTCACTTAAGTCCTTATGTAATAAGATAAACTCATAAACTTTTTCTAAT GCATCACAATAATATCAGATATGTCAAAGGTCAATTTCCTTTTCCCGCTCATTCTTTTTCTGGTATTGACTTTGAAATGT GGTGCTATTTTCAGGTGGCAAGACAACTCTGTGTAAACATTGCACCTGAAAACCTGCATCTTCCATCACCATTATCTACC GTGGGAGAATATGAGGTTCCACTGCGTTTACCCAGGTCCATCCCTTTGCCTGAGGGCAAGGTTAACTGGAGTTTGCAAGT TAAAGTCCGGAGTAAATAATCACAAAGCCTTGTTGAAACTAAAGTTTATCAGGATGAAGGTTTTGGTTCATTTATACTGA TAAATTGAACCCAGGGGATTCTAGAATTGCAATCTTCCTAGTCAAATTTTTCATCTGACTTACAATTGATTTTGTTTATG TATTAGTCTTCTGGTCTTCAATAAGTACCCTTTTCATTTATTTACCTTCATTTTGAGACTCATGAACCAACTTGCAATTT ACTCCCTTTGAAGATGTAAAATGCATTTTACAATTAGACTTCTTTTTTCTATGATGAATATCACAAAACAGGTCGCACAT GATAAGGTCCTTGAAACGAAGAGCTCGTTTCGATACCTGTTTTCATACTTTCTAACGGGTATCCAAATTGGCTCTAAAGT AGTATGATGTTTTTTTAGCACTAAAGTAGTATGATGTTAGTTCCATGCTATTGTTTTTTACAAAAAGTTTCTTGAAGTTG AGCATTTTCTCAATGAATACTGTGTTGGAAGAGTGTTTTCAGAAAGTCATTTATGTTCAATTATAGTTTATTTGATCAGT TTATATGTTTATTTAATTAAAATAATTTGTTGTGTTTTTTTTATAGGCCAAATATTGTATTGGGTGCTAAACCCAAATAC AAAGAAAAGAAAAACCAGGAAAAAATTACAGCCAAAACAAAACACTCTAGAAGACTAGCATGCAAAAGCTTGAGCAACTA GAGCACAACAAAAGCATGAAGCCAGCACACACCAAAATACCCATCCAGCAACCAACCAAACAAAACTCATGCCCACCCCC AATAAAAAGACACACCTACCCAAACCCCAAACCGTAAAACAAAAAAAGAGAGCTCCAATCAATCCTTGCACCACGATAGC CATCACCCAAAACTAGAAAATGATCCCGATTACACAACAGAAAACTGAAACAGTGTAGTGGGTAACTGAAACAGTGTGGT GGGTAGGTTTTGCATACTGTTTATTGCCTACAGGTAACGTTAATGTACACATGACAAATTTAAATGTAGGAAATTTTATT CCCTCATGTGTATATATGCCTTCTCATCAAGAGAACGCAGCAGAACTATTTAATGGACTGGTCTAGTCCTTCTCACATGT TGTGGCTAACTACTATACTAATATTATATATGGGTGCATCAATAATTCCTAATATATGGAATAATGGATCCAAAGTATCA AGCACACAGACCCACTCTGTGTTGTCCTTGTTTGTGGCTACCATTCCTGATGTGTTTGGTTTAATTTTTGCAACTCATTT TGAGTTTTAAATCAATTCTAGTAAGACATTATGGGTATGTTTGCTGCAACATTTCTAATGGTGAGCTTAGAAAACTATTG TGAGTAGCTTGTTTTTTATTCCTTGTAATAAATATTGATAAGTTTCTCATGGGAAGAAGTAATTTTATGAGGAAGTTAAC AAGTAACTTTCATGTAAAGAAAAGCGGTTTGAGTTGAGTTGACAAAAATATGTACAAACATGTTGCTCAATTTCAAATTT TGCCACTACAAAAGAGTATAATTTTCATGTACGACTAGTGTAATTTTTTTTTTCCCAGTGACTTGTAAGTATTGTCACAA 

CDS sequence (LotjaGi3g1v0466900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTATCTTCAATATGGAAGACTTGGTGTTAGGCAGATCATCAGATTTAGAGATTCCAGTTCTAATAGTGCTGTCGT AAACCCACTTCTGTATGCGTCTCAAGGACTTCGATACAACAGGAAGCTCCAAGTCATCCTTACAACTGACATAGATAAGC TTGGAAAGGCAGGCGATACGGTCAAGGTTGCTCCTGGATATTTTCGCAACCACCTAATGCCCAAGCTCCTCGCTGTCCCT AACATTGATAAGTTTGCTTATCTCCTCACTGAGCAGCGCAAGATTTATCAACCTACTGAAGAAGAAAAACAAGAAGACGT TACTGTAGTTAAAGAGTCAAAGGAAGATCTGATGAAAGAGTATGAAGCAGCCGCACTTCGTCTTGATAAGGCTAAGCTGG TCTTGCGGAGGTTAATTGATGTTAAAAAAGCTAAGGCACGTGCATCAAAAGATGAACCCTTGGAAATACGATTACCTGTG ACAAAAGAAGTACTTGTGGCTGAGGTGGCAAGACAACTCTGTGTAAACATTGCACCTGAAAACCTGCATCTTCCATCACC ATTATCTACCGTGGGAGAATATGAGGTTCCACTGCGTTTACCCAGGTCCATCCCTTTGCCTGAGGGCAAGGTTAACTGGA GTTTGCAAGTTAAAGTCCGGAGTAAATAA 

Protein sequence (LotjaGi3g1v0466900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGYLQYGRLGVRQIIRFRDSSSNSAVVNPLLYASQGLRYNRKLQVILTTDIDKLGKAGDTVKVAPGYFRNHLMPKLLAVP NIDKFAYLLTEQRKIYQPTEEEKQEDVTVVKESKEDLMKEYEAAALRLDKAKLVLRRLIDVKKAKARASKDEPLEIRLPV TKEVLVAEVARQLCVNIAPENLHLPSPLSTVGEYEVPLRLPRSIPLPEGKVNWSLQVKVRSK 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 221 221 2.0E-103
PANTHER 1 221 221 2.0E-103
SUPERFAMILY 43 97 55 8.55E-12
Gene3D 43 91 49 5.6E-15
Pfam 44 80 37 9.1E-15
Coils 111 134 24 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0466900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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