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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR021883
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.583s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0308169.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508702340|gb|EOX94236.1| chr0 160883497 160886515 -
2 domain predictions
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Lj1g3v4899070.1
n.a. Tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508703128|gb|EOX95024.1| chr1 59417673 59422123 -
2 domain predictions
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LotjaGi1g1v0766300.1
n.a. Protein LOW PSII ACCUMULATION 1, chloroplastic; TAIR: AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|V7CY17|V7CY17_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0766300 LjG1.1_chr1 133932479 133937069 -
2 domain predictions
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LotjaGi1g1v0766300.2
n.a. Photosystem I assembly protein ycf3; TAIR: AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|V7CY17|V7CY17_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0766300 LjG1.1_chr1 133932479 133937069 -
2 domain predictions
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LotjaGi5g1v0150800.1
n.a. Protein LOW PSII ACCUMULATION 1, chloroplastic; TAIR: AT4G28740.1 LOW PSII ACCUMULATION-like protein; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|I3SYF4|I3SYF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0150800 LjG1.1_chr5 39222824 39233803 -
2 domain predictions
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