Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0766300 |
Transcript ID | LotjaGi1g1v0766300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein LOW PSII ACCUMULATION 1, chloroplastic; TAIR: AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|V7CY17|V7CY17_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0766300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133932479..133937069) extracted from Lotus japonicus Gifu genome v1.2.
CAACCCTTGAGTTTTCCATCCACTTATTTTCCATTGAAACAAACGATGCCTGTTTGGATAACACATTAATCGCATCAAAG ATAACAGTAACAAAAACCAGATTATGAAACTTGGTCGGCAATGGCAATGGCAATGGCTGTGGTTGCAGCAGCTCAGCAAT TCCAATGCTTCTTCTTCTTCTCAGAACCAAATTCGATGATCAGAACCACAACATGGCCATGCTTACCTCTTCTTACACCA CCGTCACGTAGAAAGATTCAATTCTCACTCATCTCACGCGCTTCCTCGCAGACCCCAGAAGCTGCTCAGACTCAAACCGC TGAATCCTGCGTCAATTTGGGTCTTGACCTCTTCTCCAAAGGACGGGTGGGTAGTATGGTTTTCTTCAACTTTTCCCACC TTCTACTTCATTTTCCAACCATGGTGTTTAACTGGGTACTTCAAAGTTCGCTTCTCTTTTTCTGGATTTCTCAGGTTAAA GATGCTTTGACTCAGTTTGAAACAGCGCTTTCCTTGAATCCCAACCCTGTGGAGGCTCAAGCTGCTTTCTACAACAAAGC TTGCTGCCATGCATACAGGTATAATATCTTAATTCAATGAATGAAAGTGGAATCCACAGTTTGCAAATTGCAATGTATGG TCTCTGAGTTCATGAGTGGAAGTTATGTTTGTGGGCAAGTGTTTAGTCAATCGAATTTGCTACTATATGGCTGTTATTCT TATTCATTCAGATTGTATCCACTACTTGAGTCATGGGACTTGTATATTGTGAGGTGTTCCTAGTGTTTGAATCAACTTAT TTGCCAGAAGCTTCCCCCCATATAATTGATTATGCCTTTAAAATTAATTGTTGAAAAATTTCTAAACGTGTACTATGCAA GTGGGCATTTCTAGAATTGCAATATTTCTTCAGTTCCTTCATTATATAAACAAATTCAGTTGATTTACTAAGGGTATTGG TTAGCTTAGACTTCTGTTTTTATCTTTTCGTTCTAATATAGATGTTGTTTGGTTATTGTTGGTACGAAGAGGAGAGGGAA AGAAAGCTGCTGAGTGTCTCCGCACTGCTTTGAGGGAATACAACCTAAAATTTTCCACCATTCTTAATGATCCAGACTTG GCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGTTTGCTAATTGGTTTTCAACGATTTTGAAATGCT AAGTTGTCTGATCTTTATGCAATTTTTGTAGTTGTCAATGACCAAATCATTTAAAAGCTTTAGCTCTTAGATGACTCATG AAGGTTCACAAATGACTTTTTATACATCTCTAACTATAGTAGCTTTGAAGATTATGATATTCTGTAAAATCATCGATAGA AAATACTTTACCTTATGTGTTTCCTGATTCCTCCTCTTGCCCCTGCTCCCTCTGCTGAGATAGCCTAAATTAAAAGAAGA TAATGTGACAGTCGAACAGGAAAATCATTTGATTATTTGAAAGGAACTTATGACCCTGATTATAATCCTGTCTAATTAAG GATGAAATTTGTAGCATTGAATCTTAATGATATTCTGCCATGCGACCAGGCTAGGCTGGGTGGGGAAGATATTGGCTCCA GTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGATTAGAAGATTCTTTTATGTAGCACTG ACGGCAGCTGCAGGAGTATCATTGTTGCTTACCATACCCAGACTCTTTCTTGCCATTAAAGGCGGTGATGATGCTCCTGG TCTCTTGGAAACTTCTGGGAATGCTGCCATTAACATTGGAGGTGAATAGTGACCCATTTAACTTTCTCTTAGAAACAATT CAGCTTCAGTTTTTACTAAGTTAGTGTTATTCTCAGCTGTCTTTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTTAGTGT TTTTCCTTTTAAGATGATTGCAGTGTGTGACACCTGAGAAAATACCTTCTAAATTGCTTCATTAAATGACTAAGCACTGG AATCAGCAATGTACAGGTATTGTTGTTTTTGTGGCATTATTCTTTTGGGACAACAAAAAAGAGGAGGAACAACTGGCGCA AATATCTCGAAATGAAACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTTGAACTTGTGCAGCTACGGG ACACAGTTAGGCCAGTGAGTATTTGTATTTCTTCTCCTCTTCCAACTTTTTATTTCTCGGAGCCCCTTCTGGCAGTAACC AATATGTTTACCCCGTATTTAAGTTTGTCAGCAATTCTGTAATGTTCTAATTATTACTATTTAGTAATAGACTAATATAG TTATCAAGTTAGAGCAGTTATTCTTTCTCTTTGCAAAATTCCTTTTCTTTTTTCTCTTTATTTCTTCCCTTTGGTTCCTT TCCTGTTCACTATAATGTCCCATGCTTTAACCACAGTTTTGGTTTTAGGTCATCTTAGCAGGCACAAAAGAAACAGTATC TTTGGCTTTACGAAAAGCAGAGAGATTTCGCTCTGAACTCATTAAACGTGGTGTTCTGTTAGTCCCTGTCATCTGGGGAG AAGGTAAAGAACCAAAAATTGAAAAGAAAGGTTTTGGTCTTTCTTCAAAGGCTGCTGCTGAGGCTCTTCCCTCCATTGGG GTAAGACTTGATATAACCATGTGCCTTCATGAAACTTGCTCTTCATCCAAAACTTTTGTTTCTTTGATGATATGACCCTA ACCCATAAAACTTTGCTAGGAAGATTTTGAAAAGCGAACACAGTCCATAACTGCAAAATCAAAGTTGAAAGCTGAAGTTA GGTTCAAGGCTGAGGTTATATCACCAGCAGAGTGGGAACGGTATGTTATGATATCTTGTCTATATTATTGAATTGCCTAC TGTTTTATTCTATTCTTCTTTAAATGAGGGGAAATTAGCATCAGCATAGCGAAAGGGTGGATTGATGTCAACTAAAGATG CATTTGGAAGAGTTTATTTGAACTTGTCTTATAGCATAAGAACTTAAGTGAAGTGTTTGGTTAAGCTAGTGAAAAAGCTT ATGACATACCTATAAGCTTTATTGAGCTTATTTTCATATTAGCTTATGAATAAGTACTTATACCTGCCTATAAGTTATTT TGAACTTATTTCAATAAGTTTCTCAAATAATCTTATGAATAAACTTTATGTGATAAGTGCTTATGGACAGAAGCGCTGAT TAAAGCTACTTACGCGAACGATTCCTAAATAGTGCATAATAGAGAAAAATGGAAAATGTGAGAGAAGAGTTGCTTATAGC TGCATCTTAACATGTGCTAACTTAACTAGGTGGATAAGAGATCAGCAGAAGGCTGAAGGAGTCACAGTTGGTGAAGATGT GTACATAATATTGCGCTTAGATGGTCGGGTTCGAAGATCAGGGAAAGTAAGTGCCATTTCTGAGCAAACTCATTCTCCAT TGATGTAGAACTGTCATTTATTATCATGTTGTATGCCAACAAAAACTATGAACATTACAAGACAAGGATAAGATTTGATT TCCATGCCTTATGTGCTTTTTTTATAGGCAAATGTTAGTTGTTAGTAATGTTAGTAAATTAGTCCTCCTCAGGGTTCGAA CCCTGGACCTTCGCCCTTCATCCCACCCAACCCTTATGTCCCTAGCTCTTGCCACTTGAGCTATCCTTCTGGGACCCAAG CCTTATGTGCTTGATAATACTGTCTAAATGGCAAGCAAGCATGAGGTGAAATGAATGGGATTTTAAGAATATCATTAAAA CCAGCTCATCATTTGGGAGGCTTTTCTTCATGTGATGACTTGTTTTCAAAGCTTGATGAATATCATTTGAATTTTACATC TTAGGTGACACAATTGGAATTGCATTATTAGATGTTAGTTCTCAACTAATAACTCTCAACAGTGCAGTTTGATTCAAGGG GAATGTTGTGTGACAAATTCTTATGTTCTTGTAGAAATTGACAACTAGGTTTCTTTACTTTTATCTCCTTGATTGCAATC AGGGTTGTTAATGGCGGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGCG GCAAATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCCAGGGCGCTACGCTATAGGCTATTGCGCCGCTATAGCGTGCTA TTAACAAGCCTGATTGCAATACTAATCTTAAACTAATAAATGCTAATAATGCATTTGCAGGGTATGCCTGATTGGCAGAA AATTGTGAATGAGCTGCCACCAATGGAAGCACTTTTAAGCAAGCTAGAAAGATGAGAACTGTTGCATTGCTTATTTTTCT TCCTGAAATCAGAGGGTGCATTTTTAATTTAATTTTTTTCCTACGTTTAAGCATAGCCCTGGTATCATCGTCATTTGTAA TGTCCCACAACAATATTTATCTGGATCACTAAATTAAACATTGTACATCCATTCCTCCACCACGTTCATTGCTACAATTG CCAGTTAAAGTTGCAGCTGAAGGAAGCAATATTAATATTTTAAAAAATATGCTTGAATTCAGTTTTAAAAAAGCGAGTTA AACTTGATTATAATTTTATGCAGTTTGAGAG
CDS sequence (LotjaGi1g1v0766300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGCAATGGCTGTGGTTGCAGCAGCTCAGCAATTCCAATGCTTCTTCTTCTTCTCAGAACCAAATTCGATGAT CAGAACCACAACATGGCCATGCTTACCTCTTCTTACACCACCGTCACGTAGAAAGATTCAATTCTCACTCATCTCACGCG CTTCCTCGCAGACCCCAGAAGCTGCTCAGACTCAAACCGCTGAATCCTGCGTCAATTTGGGTCTTGACCTCTTCTCCAAA GGACGGGTGGGTAGTATGGTTTTCTTCAACTTTTCCCACCTTCTACTTCATTTTCCAACCATGGTGTTTAACTGGGTACT TCAAAGTTCGCTTCTCTTTTTCTGGATTTCTCAGGTTAAAGATGCTTTGACTCAGTTTGAAACAGCGCTTTCCTTGAATC CCAACCCTGTGGAGGCTCAAGCTGCTTTCTACAACAAAGCTTGCTGCCATGCATACAGAGGAGAGGGAAAGAAAGCTGCT GAGTGTCTCCGCACTGCTTTGAGGGAATACAACCTAAAATTTTCCACCATTCTTAATGATCCAGACTTGGCCTCCTTCAG AGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATTGGCTCCAGTTTTCGGAGAGATC TAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGATTAGAAGATTCTTTTATGTAGCACTGACGGCAGCTGCAGGA GTATCATTGTTGCTTACCATACCCAGACTCTTTCTTGCCATTAAAGGCGGTGATGATGCTCCTGGTCTCTTGGAAACTTC TGGGAATGCTGCCATTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCTTTTGGGACAACAAAAAAGAGGAGGAAC AACTGGCGCAAATATCTCGAAATGAAACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTTGAACTTGTG CAGCTACGGGACACAGTTAGGCCAGTCATCTTAGCAGGCACAAAAGAAACAGTATCTTTGGCTTTACGAAAAGCAGAGAG ATTTCGCTCTGAACTCATTAAACGTGGTGTTCTGTTAGTCCCTGTCATCTGGGGAGAAGGTAAAGAACCAAAAATTGAAA AGAAAGGTTTTGGTCTTTCTTCAAAGGCTGCTGCTGAGGCTCTTCCCTCCATTGGGGAAGATTTTGAAAAGCGAACACAG TCCATAACTGCAAAATCAAAGTTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGTTATATCACCAGCAGAGTGGGAACGGTG GATAAGAGATCAGCAGAAGGCTGAAGGAGTCACAGTTGGTGAAGATGTGTACATAATATTGCGCTTAGATGGTCGGGTTC GAAGATCAGGGAAAGGTATGCCTGATTGGCAGAAAATTGTGAATGAGCTGCCACCAATGGAAGCACTTTTAAGCAAGCTA GAAAGATGA
Protein sequence (LotjaGi1g1v0766300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAMAVVAAAQQFQCFFFFSEPNSMIRTTTWPCLPLLTPPSRRKIQFSLISRASSQTPEAAQTQTAESCVNLGLDLFSK GRVGSMVFFNFSHLLLHFPTMVFNWVLQSSLLFFWISQVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAA ECLRTALREYNLKFSTILNDPDLASFRALPEFKELQEEARLGGEDIGSSFRRDLKLISEVQAPFRGIRRFFYVALTAAAG VSLLLTIPRLFLAIKGGDDAPGLLETSGNAAINIGGIVVFVALFFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELV QLRDTVRPVILAGTKETVSLALRKAERFRSELIKRGVLLVPVIWGEGKEPKIEKKGFGLSSKAAAEALPSIGEDFEKRTQ SITAKSKLKAEVRFKAEVISPAEWERWIRDQQKAEGVTVGEDVYIILRLDGRVRRSGKGMPDWQKIVNELPPMEALLSKL ER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 16 | 16 | - | – | |
Phobius | 1 | 3 | 3 | - | – | |
PANTHER | 3 | 482 | 480 | 6.9E-220 | – | |
PANTHER | 3 | 482 | 480 | 6.9E-220 | – | |
Phobius | 4 | 11 | 8 | - | – | |
Phobius | 12 | 16 | 5 | - | – | |
Phobius | 17 | 93 | 77 | - | – | |
Gene3D | 43 | 176 | 134 | 7.1E-7 | ||
SUPERFAMILY | 66 | 169 | 104 | 1.61E-7 | ||
Phobius | 94 | 116 | 23 | - | – | |
TMHMM | 94 | 116 | 23 | - | – | |
Phobius | 117 | 229 | 113 | - | – | |
Pfam | 211 | 288 | 78 | 8.7E-23 | ||
Phobius | 230 | 254 | 25 | - | – | |
TMHMM | 230 | 252 | 23 | - | – | |
Phobius | 255 | 265 | 11 | - | – | |
Phobius | 266 | 286 | 21 | - | – | |
TMHMM | 267 | 286 | 20 | - | – | |
Phobius | 287 | 482 | 196 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0766300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…