Domain Predictions — View

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PF11998

Source: Pfam

Description

Protein of unknown function (DUF3493)

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0308169.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Uncharacterized protein isoform 1 [Theobroma cacao] gi\|508702340\|gb\|EOX94236.1\|	Domains CYTOPLASMIC_DOMAIN IPR021883 NON_CYTOPLASMIC_DOMAIN PF11998 PTHR35498 PTHR35498:SF1 TMhelix TRANSMEMBRANE	8
Lj1g3v4899070.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tetratricopeptide repeat-containing protein [Theobroma cacao] gi\|508703128\|gb\|EOX95024.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.25.40.10 IPR011990 IPR021883 NON_CYTOPLASMIC_DOMAIN PF11998 PTHR17130 PTHR17130:SF20 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF48452 TMhelix TRANSMEMBRANE	15
LotjaGi1g1v0766300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein LOW PSII ACCUMULATION 1, chloroplastic; TAIR: AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp\|Q9SRY4\|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr\|V7CY17\|V7CY17_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0766300	Domains CYTOPLASMIC_DOMAIN G3DSA:1.25.40.10 IPR011990 IPR021883 NON_CYTOPLASMIC_DOMAIN PF11998 PTHR35498 PTHR35498:SF4 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF48452 TMhelix TRANSMEMBRANE	15
LotjaGi1g1v0766300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Photosystem I assembly protein ycf3; TAIR: AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp\|Q9SRY4\|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr\|V7CY17\|V7CY17_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0766300	Domains CYTOPLASMIC_DOMAIN G3DSA:1.25.40.10 IPR011990 IPR013026 IPR013105 IPR019734 IPR021883 NON_CYTOPLASMIC_DOMAIN PF07719 PF11998 PS50005 PS50293 PTHR35498 PTHR35498:SF4 SM00028 SSF48452 TMhelix TRANSMEMBRANE	18
LotjaGi5g1v0150800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein LOW PSII ACCUMULATION 1, chloroplastic; TAIR: AT4G28740.1 LOW PSII ACCUMULATION-like protein; Swiss-Prot: sp\|Q9SRY4\|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr\|I3SYF4\|I3SYF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0150800	Domains CYTOPLASMIC_DOMAIN IPR021883 NON_CYTOPLASMIC_DOMAIN PF11998 PTHR35498 PTHR35498:SF1 TMhelix TRANSMEMBRANE	8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	20.00