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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0766300 |
| Transcript ID | LotjaGi1g1v0766300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I assembly protein ycf3; TAIR: AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|V7CY17|V7CY17_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0766300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133932479..133937069) extracted from Lotus japonicus Gifu genome v1.2.
CAACCCTTGAGTTTTCCATCCACTTATTTTCCATTGAAACAAACGATGCCTGTTTGGATAACACATTAATCGCATCAAAG ATAACAGTAACAAAAACCAGATTATGAAACTTGGTCGGCAATGGCAATGGCAATGGCTGTGGTTGCAGCAGCTCAGCAAT TCCAATGCTTCTTCTTCTTCTCAGAACCAAATTCGATGATCAGAACCACAACATGGCCATGCTTACCTCTTCTTACACCA CCGTCACGTAGAAAGATTCAATTCTCACTCATCTCACGCGCTTCCTCGCAGACCCCAGAAGCTGCTCAGACTCAAACCGC TGAATCCTGCGTCAATTTGGGTCTTGACCTCTTCTCCAAAGGACGGGTGGGTAGTATGGTTTTCTTCAACTTTTCCCACC TTCTACTTCATTTTCCAACCATGGTGTTTAACTGGGTACTTCAAAGTTCGCTTCTCTTTTTCTGGATTTCTCAGGTTAAA GATGCTTTGACTCAGTTTGAAACAGCGCTTTCCTTGAATCCCAACCCTGTGGAGGCTCAAGCTGCTTTCTACAACAAAGC TTGCTGCCATGCATACAGGTATAATATCTTAATTCAATGAATGAAAGTGGAATCCACAGTTTGCAAATTGCAATGTATGG TCTCTGAGTTCATGAGTGGAAGTTATGTTTGTGGGCAAGTGTTTAGTCAATCGAATTTGCTACTATATGGCTGTTATTCT TATTCATTCAGATTGTATCCACTACTTGAGTCATGGGACTTGTATATTGTGAGGTGTTCCTAGTGTTTGAATCAACTTAT TTGCCAGAAGCTTCCCCCCATATAATTGATTATGCCTTTAAAATTAATTGTTGAAAAATTTCTAAACGTGTACTATGCAA GTGGGCATTTCTAGAATTGCAATATTTCTTCAGTTCCTTCATTATATAAACAAATTCAGTTGATTTACTAAGGGTATTGG TTAGCTTAGACTTCTGTTTTTATCTTTTCGTTCTAATATAGATGTTGTTTGGTTATTGTTGGTACGAAGAGGAGAGGGAA AGAAAGCTGCTGAGTGTCTCCGCACTGCTTTGAGGGAATACAACCTAAAATTTTCCACCATTCTTAATGATCCAGACTTG GCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGTTTGCTAATTGGTTTTCAACGATTTTGAAATGCT AAGTTGTCTGATCTTTATGCAATTTTTGTAGTTGTCAATGACCAAATCATTTAAAAGCTTTAGCTCTTAGATGACTCATG AAGGTTCACAAATGACTTTTTATACATCTCTAACTATAGTAGCTTTGAAGATTATGATATTCTGTAAAATCATCGATAGA AAATACTTTACCTTATGTGTTTCCTGATTCCTCCTCTTGCCCCTGCTCCCTCTGCTGAGATAGCCTAAATTAAAAGAAGA TAATGTGACAGTCGAACAGGAAAATCATTTGATTATTTGAAAGGAACTTATGACCCTGATTATAATCCTGTCTAATTAAG GATGAAATTTGTAGCATTGAATCTTAATGATATTCTGCCATGCGACCAGGCTAGGCTGGGTGGGGAAGATATTGGCTCCA GTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGATTAGAAGATTCTTTTATGTAGCACTG ACGGCAGCTGCAGGAGTATCATTGTTGCTTACCATACCCAGACTCTTTCTTGCCATTAAAGGCGGTGATGATGCTCCTGG TCTCTTGGAAACTTCTGGGAATGCTGCCATTAACATTGGAGGTGAATAGTGACCCATTTAACTTTCTCTTAGAAACAATT CAGCTTCAGTTTTTACTAAGTTAGTGTTATTCTCAGCTGTCTTTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTTAGTGT TTTTCCTTTTAAGATGATTGCAGTGTGTGACACCTGAGAAAATACCTTCTAAATTGCTTCATTAAATGACTAAGCACTGG AATCAGCAATGTACAGGTATTGTTGTTTTTGTGGCATTATTCTTTTGGGACAACAAAAAAGAGGAGGAACAACTGGCGCA AATATCTCGAAATGAAACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTTGAACTTGTGCAGCTACGGG ACACAGTTAGGCCAGTGAGTATTTGTATTTCTTCTCCTCTTCCAACTTTTTATTTCTCGGAGCCCCTTCTGGCAGTAACC AATATGTTTACCCCGTATTTAAGTTTGTCAGCAATTCTGTAATGTTCTAATTATTACTATTTAGTAATAGACTAATATAG TTATCAAGTTAGAGCAGTTATTCTTTCTCTTTGCAAAATTCCTTTTCTTTTTTCTCTTTATTTCTTCCCTTTGGTTCCTT TCCTGTTCACTATAATGTCCCATGCTTTAACCACAGTTTTGGTTTTAGGTCATCTTAGCAGGCACAAAAGAAACAGTATC TTTGGCTTTACGAAAAGCAGAGAGATTTCGCTCTGAACTCATTAAACGTGGTGTTCTGTTAGTCCCTGTCATCTGGGGAG AAGGTAAAGAACCAAAAATTGAAAAGAAAGGTTTTGGTCTTTCTTCAAAGGCTGCTGCTGAGGCTCTTCCCTCCATTGGG GTAAGACTTGATATAACCATGTGCCTTCATGAAACTTGCTCTTCATCCAAAACTTTTGTTTCTTTGATGATATGACCCTA ACCCATAAAACTTTGCTAGGAAGATTTTGAAAAGCGAACACAGTCCATAACTGCAAAATCAAAGTTGAAAGCTGAAGTTA GGTTCAAGGCTGAGGTTATATCACCAGCAGAGTGGGAACGGTATGTTATGATATCTTGTCTATATTATTGAATTGCCTAC TGTTTTATTCTATTCTTCTTTAAATGAGGGGAAATTAGCATCAGCATAGCGAAAGGGTGGATTGATGTCAACTAAAGATG CATTTGGAAGAGTTTATTTGAACTTGTCTTATAGCATAAGAACTTAAGTGAAGTGTTTGGTTAAGCTAGTGAAAAAGCTT ATGACATACCTATAAGCTTTATTGAGCTTATTTTCATATTAGCTTATGAATAAGTACTTATACCTGCCTATAAGTTATTT TGAACTTATTTCAATAAGTTTCTCAAATAATCTTATGAATAAACTTTATGTGATAAGTGCTTATGGACAGAAGCGCTGAT TAAAGCTACTTACGCGAACGATTCCTAAATAGTGCATAATAGAGAAAAATGGAAAATGTGAGAGAAGAGTTGCTTATAGC TGCATCTTAACATGTGCTAACTTAACTAGGTGGATAAGAGATCAGCAGAAGGCTGAAGGAGTCACAGTTGGTGAAGATGT GTACATAATATTGCGCTTAGATGGTCGGGTTCGAAGATCAGGGAAAGTAAGTGCCATTTCTGAGCAAACTCATTCTCCAT TGATGTAGAACTGTCATTTATTATCATGTTGTATGCCAACAAAAACTATGAACATTACAAGACAAGGATAAGATTTGATT TCCATGCCTTATGTGCTTTTTTTATAGGCAAATGTTAGTTGTTAGTAATGTTAGTAAATTAGTCCTCCTCAGGGTTCGAA CCCTGGACCTTCGCCCTTCATCCCACCCAACCCTTATGTCCCTAGCTCTTGCCACTTGAGCTATCCTTCTGGGACCCAAG CCTTATGTGCTTGATAATACTGTCTAAATGGCAAGCAAGCATGAGGTGAAATGAATGGGATTTTAAGAATATCATTAAAA CCAGCTCATCATTTGGGAGGCTTTTCTTCATGTGATGACTTGTTTTCAAAGCTTGATGAATATCATTTGAATTTTACATC TTAGGTGACACAATTGGAATTGCATTATTAGATGTTAGTTCTCAACTAATAACTCTCAACAGTGCAGTTTGATTCAAGGG GAATGTTGTGTGACAAATTCTTATGTTCTTGTAGAAATTGACAACTAGGTTTCTTTACTTTTATCTCCTTGATTGCAATC AGGGTTGTTAATGGCGGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGCG GCAAATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCCAGGGCGCTACGCTATAGGCTATTGCGCCGCTATAGCGTGCTA TTAACAAGCCTGATTGCAATACTAATCTTAAACTAATAAATGCTAATAATGCATTTGCAGGGTATGCCTGATTGGCAGAA AATTGTGAATGAGCTGCCACCAATGGAAGCACTTTTAAGCAAGCTAGAAAGATGAGAACTGTTGCATTGCTTATTTTTCT TCCTGAAATCAGAGGGTGCATTTTTAATTTAATTTTTTTCCTACGTTTAAGCATAGCCCTGGTATCATCGTCATTTGTAA TGTCCCACAACAATATTTATCTGGATCACTAAATTAAACATTGTACATCCATTCCTCCACCACGTTCATTGCTACAATTG CCAGTTAAAGTTGCAGCTGAAGGAAGCAATATTAATATTTTAAAAAATATGCTTGAATTCAGTTTTAAAAAAGCGAGTTA AACTTGATTATAATTTTATGCAGTTTGAGAG
CDS sequence (LotjaGi1g1v0766300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGCAATGGCTGTGGTTGCAGCAGCTCAGCAATTCCAATGCTTCTTCTTCTTCTCAGAACCAAATTCGATGAT CAGAACCACAACATGGCCATGCTTACCTCTTCTTACACCACCGTCACGTAGAAAGATTCAATTCTCACTCATCTCACGCG CTTCCTCGCAGACCCCAGAAGCTGCTCAGACTCAAACCGCTGAATCCTGCGTCAATTTGGGTCTTGACCTCTTCTCCAAA GGACGGGTTAAAGATGCTTTGACTCAGTTTGAAACAGCGCTTTCCTTGAATCCCAACCCTGTGGAGGCTCAAGCTGCTTT CTACAACAAAGCTTGCTGCCATGCATACAGAGGAGAGGGAAAGAAAGCTGCTGAGTGTCTCCGCACTGCTTTGAGGGAAT ACAACCTAAAATTTTCCACCATTCTTAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAA GAAGAGGCTAGGCTGGGTGGGGAAGATATTGGCTCCAGTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACC ATTTCGTGGGATTAGAAGATTCTTTTATGTAGCACTGACGGCAGCTGCAGGAGTATCATTGTTGCTTACCATACCCAGAC TCTTTCTTGCCATTAAAGGCGGTGATGATGCTCCTGGTCTCTTGGAAACTTCTGGGAATGCTGCCATTAACATTGGAGGT ATTGTTGTTTTTGTGGCATTATTCTTTTGGGACAACAAAAAAGAGGAGGAACAACTGGCGCAAATATCTCGAAATGAAAC ACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTTGAACTTGTGCAGCTACGGGACACAGTTAGGCCAGTCA TCTTAGCAGGCACAAAAGAAACAGTATCTTTGGCTTTACGAAAAGCAGAGAGATTTCGCTCTGAACTCATTAAACGTGGT GTTCTGTTAGTCCCTGTCATCTGGGGAGAAGGTAAAGAACCAAAAATTGAAAAGAAAGGTTTTGGTCTTTCTTCAAAGGC TGCTGCTGAGGCTCTTCCCTCCATTGGGGAAGATTTTGAAAAGCGAACACAGTCCATAACTGCAAAATCAAAGTTGAAAG CTGAAGTTAGGTTCAAGGCTGAGGTTATATCACCAGCAGAGTGGGAACGGTGGATAAGAGATCAGCAGAAGGCTGAAGGA GTCACAGTTGGTGAAGATGTGTACATAATATTGCGCTTAGATGGTCGGGTTCGAAGATCAGGGAAAGGTATGCCTGATTG GCAGAAAATTGTGAATGAGCTGCCACCAATGGAAGCACTTTTAAGCAAGCTAGAAAGATGA
Protein sequence (LotjaGi1g1v0766300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAMAVVAAAQQFQCFFFFSEPNSMIRTTTWPCLPLLTPPSRRKIQFSLISRASSQTPEAAQTQTAESCVNLGLDLFSK GRVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAAECLRTALREYNLKFSTILNDPDLASFRALPEFKELQ EEARLGGEDIGSSFRRDLKLISEVQAPFRGIRRFFYVALTAAAGVSLLLTIPRLFLAIKGGDDAPGLLETSGNAAINIGG IVVFVALFFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGTKETVSLALRKAERFRSELIKRG VLLVPVIWGEGKEPKIEKKGFGLSSKAAAEALPSIGEDFEKRTQSITAKSKLKAEVRFKAEVISPAEWERWIRDQQKAEG VTVGEDVYIILRLDGRVRRSGKGMPDWQKIVNELPPMEALLSKLER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 193 | 193 | - | – | |
| PANTHER | 3 | 446 | 444 | 1.6E-223 | – | |
| PANTHER | 3 | 446 | 444 | 1.6E-223 | – | |
| Gene3D | 52 | 152 | 101 | 5.6E-11 | ||
| SUPERFAMILY | 65 | 133 | 69 | 3.56E-10 | ||
| ProSiteProfiles | 67 | 137 | 71 | 10.945 | ||
| Pfam | 67 | 99 | 33 | 2.9E-5 | ||
| SMART | 67 | 100 | 34 | 0.0017 | ||
| ProSiteProfiles | 67 | 100 | 34 | 10.178 | ||
| SMART | 104 | 137 | 34 | 170.0 | ||
| Pfam | 175 | 252 | 78 | 7.7E-23 | ||
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 194 | 218 | 25 | - | – | |
| Phobius | 219 | 229 | 11 | - | – | |
| Phobius | 230 | 250 | 21 | - | – | |
| TMHMM | 231 | 250 | 20 | - | – | |
| Phobius | 251 | 446 | 196 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0766300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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