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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022227
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.213s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0270089.1
n.a. Disease resistance protein [Theobroma cacao] gi|508711069|gb|EOY02966.1| chr0 139946327 139949685 -
2 domain predictions
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Lj0g3v0272679.1
n.a. Disease resistance protein [Theobroma cacao] gi|508711069|gb|EOY02966.1| chr0 141292063 141299483 -
2 domain predictions
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Lj1g3v2938540.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508703613|gb|EOX95509.1| chr1 33187183 33193505 +
2 domain predictions
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Lj5g3v0279360.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508703613|gb|EOX95509.1| chr5 2428084 2445967 +
2 domain predictions
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Lj5g3v0279360.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508703613|gb|EOX95509.1| chr5 2428084 2445371 +
2 domain predictions
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LotjaGi1g1v0633900.1
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1; TrEMBL-Plants: tr|K7MXN7|K7MXN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633900 LjG1.1_chr1 118781867 118800193 +
2 domain predictions
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LotjaGi1g1v0633900.2
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1; TrEMBL-Plants: tr|K7MXN7|K7MXN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633900 LjG1.1_chr1 118782130 118797569 +
2 domain predictions
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LotjaGi1g1v0633900.3
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1; TrEMBL-Plants: tr|K7MXN7|K7MXN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633900 LjG1.1_chr1 118782435 118797282 +
2 domain predictions
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LotjaGi1g1v0633900.4
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1; TrEMBL-Plants: tr|K7MXN7|K7MXN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633900 LjG1.1_chr1 118782435 118797282 +
2 domain predictions
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LotjaGi1g1v0633900.5
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1; TrEMBL-Plants: tr|A0A0L9T7L3|A0A0L9T7L3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633900 LjG1.1_chr1 118782435 118797282 +
2 domain predictions
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LotjaGi1g1v0633900.6
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1; TrEMBL-Plants: tr|K7MXN7|K7MXN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633900 LjG1.1_chr1 118782435 118797282 +
2 domain predictions
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LotjaGi1g1v0633900.7
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|Q96AN5|TM143_HUMAN Transmembrane protein 143; TrEMBL-Plants: tr|V7CTT2|V7CTT2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0633900 LjG1.1_chr1 118792806 118797282 +
2 domain predictions
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LotjaGi2g1v0105800.1
n.a. Aminopeptidase; TAIR: AT3G19340.1 aminopeptidase (DUF3754); Swiss-Prot: sp|Q8VD26|TM143_MOUSE Transmembrane protein 143; TrEMBL-Plants: tr|I1JD01|I1JD01_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0105800 LjG1.1_chr2 35901626 35959551 -
2 domain predictions
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LotjaGi3g1v0000500.1
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT2G46915.1 DUF3754 family protein, putative (DUF3754); Swiss-Prot: sp|Q91ZP9|NECA2_MOUSE N-terminal EF-hand calcium-binding protein 2; TrEMBL-Plants: tr|A0A151S6G5|A0A151S6G5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0000500 LjG1.1_chr3 118569 136179 +
2 domain predictions
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LotjaGi5g1v0000200.1
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT2G46915.1 DUF3754 family protein, putative (DUF3754); Swiss-Prot: sp|Q91ZP9|NECA2_MOUSE N-terminal EF-hand calcium-binding protein 2; TrEMBL-Plants: tr|A0A151S6G5|A0A151S6G5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0000200 LjG1.1_chr5 17439 35712 -
2 domain predictions
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LotjaGi5g1v0000200.2
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT2G46915.1 DUF3754 family protein, putative (DUF3754); Swiss-Prot: sp|Q91ZP9|NECA2_MOUSE N-terminal EF-hand calcium-binding protein 2; TrEMBL-Plants: tr|A0A151S6G5|A0A151S6G5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0000200 LjG1.1_chr5 17789 35736 -
2 domain predictions
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