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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025836
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 46 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.556s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0045599.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr0 14993274 14994176 -
2 domain predictions
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Lj0g3v0077989.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr0 30023516 30024215 +
2 domain predictions
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Lj0g3v0109999.1
n.a. PREDICTED: cysteine desulfurase 1, mitochondrial [Vitis vinifera] gi|359495673|ref|XP_003635054.1| chr0 47687778 47689266 +
2 domain predictions
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Lj0g3v0133329.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr0 60991341 60991907 +
2 domain predictions
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Lj0g3v0163539.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr0 77335181 77336142 +
2 domain predictions
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Lj0g3v0167529.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr0 79719970 79720770 -
2 domain predictions
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Lj0g3v0209789.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr0 105286332 105286907 -
2 domain predictions
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Lj0g3v0237059.1
n.a. helicase [Trichomonas vaginalis G3] gi|123448118|ref|XP_001312792.1| chr0 122856689 122858081 +
2 domain predictions
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Lj0g3v0247539.1
n.a. LRR receptor-like serine/threonine-protein kinase FLS2 [Aegilops tauschii] gi|475543050|gb|EMT10072.1| chr0 128329890 128330558 +
2 domain predictions
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Lj0g3v0325539.1
n.a. PREDICTED: cysteine desulfurase 1, mitochondrial [Vitis vinifera] gi|359495673|ref|XP_003635054.1| chr0 170082948 170084427 -
2 domain predictions
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Lj0g3v0327329.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr0 171121124 171122017 -
2 domain predictions
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Lj0g3v0330499.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr0 172717126 172718118 -
2 domain predictions
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Lj0g3v0332139.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr0 173750473 173750869 +
2 domain predictions
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Lj0g3v0340399.1
n.a. non-ltr retroelement reverse transcriptase [Rosa rugosa] gi|399920227|gb|AFP55574.1| chr0 178345031 178347958 +
2 domain predictions
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Lj0g3v0349299.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr0 183433534 183434322 -
2 domain predictions
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Lj0g3v0360419.1
n.a. Uncharacterized protein TCM_010233 [Theobroma cacao] gi|508708474|gb|EOY00371.1| chr0 189824037 189824504 -
2 domain predictions
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Lj1g3v2953550.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr1 33533819 33535200 +
2 domain predictions
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Lj1g3v3608370.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr1 41554399 41554749 +
2 domain predictions
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Lj2g3v0766560.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr2 11979513 11980110 +
2 domain predictions
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Lj2g3v2878390.1
n.a. PREDICTED: cysteine desulfurase 1, mitochondrial [Vitis vinifera] gi|359495673|ref|XP_003635054.1| chr2 37473716 37475696 -
2 domain predictions
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Lj3g3v1048970.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr3 13929693 13930861 +
2 domain predictions
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Lj3g3v1788930.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr3 22732963 22734523 -
2 domain predictions
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Lj3g3v3261430.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr3 40162441 40162969 -
2 domain predictions
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Lj4g3v0336370.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr4 4059726 4060985 -
2 domain predictions
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Lj4g3v0683960.1
n.a. PREDICTED: cysteine desulfurase 1, mitochondrial [Vitis vinifera] gi|359495673|ref|XP_003635054.1| chr4 11297666 11298742 -
2 domain predictions
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Lj4g3v0975450.1
n.a. Protein T04B2.8 [Caenorhabditis elegans] gi|71993155|ref|NP_001023356.1| chr4 14212840 14213709 +
2 domain predictions
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Lj4g3v1073590.1
n.a. PREDICTED: cysteine desulfurase 1, mitochondrial [Vitis vinifera] gi|359495673|ref|XP_003635054.1| chr4 15393370 15394578 -
2 domain predictions
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Lj4g3v1154380.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr4 17395092 17395758 +
2 domain predictions
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Lj4g3v1597120.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr4 23439904 23440656 +
2 domain predictions
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Lj4g3v2847410.1
n.a. Uncharacterized protein TCM_020721 [Theobroma cacao] gi|508713924|gb|EOY05821.1| chr4 38173025 38173962 -
2 domain predictions
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Lj5g3v0035330.1
n.a. Zinc finger, CCHC-type-like protein [Theobroma cacao] gi|508727954|gb|EOY19851.1| chr5 127426 128937 -
2 domain predictions
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Lj5g3v0035380.1
n.a. PREDICTED: cysteine desulfurase 1, mitochondrial [Vitis vinifera] gi|359495673|ref|XP_003635054.1| chr5 138497 139937 +
2 domain predictions
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Lj5g3v0659690.1
n.a. orf120b [Beta vulgaris subsp]. vulgaris] gi|54606737|dbj|BAD66760.1| chr5 9273027 9274208 +
2 domain predictions
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Lj5g3v1955070.2
n.a. n.a. chr5 27612636 27619488 -
2 domain predictions
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Lj5g3v2013630.1
n.a. PREDICTED: DNA-binding protein HEXBP-like [Cicer arietinum] gi|502119274|ref|XP_004496562.1| chr5 28308614 28311905 +
2 domain predictions
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LotjaGi1g1v0200800_LC.1
n.a. Gag polyprotein; TAIR: AT3G42140.1 zinc ion binding / nucleic acid binding protein; Swiss-Prot: sp|Q9Y2Y6|TMM98_HUMAN Transmembrane protein 98; TrEMBL-Plants: tr|S8DGP6|S8DGP6_9LAMI Uncharacterized protein; Found in the gene: LotjaGi1g1v0200800_LC LjG1.1_chr1 42485457 42487393 +
2 domain predictions
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LotjaGi1g1v0241300_LC.1
n.a. Retrotransposon protein, putative, unclassified; TAIR: AT3G42140.1 zinc ion binding / nucleic acid binding protein; Swiss-Prot: sp|P15095|RDRP_NMV RNA replication protein; TrEMBL-Plants: tr|B9SLI2|B9SLI2_RICCO Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0241300_LC LjG1.1_chr1 57651742 57658444 +
2 domain predictions
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LotjaGi2g1v0017500_LC.2
n.a. Gag polyprotein; TAIR: AT5G36228.1 nucleic acid binding / zinc ion binding protein; Swiss-Prot: sp|O04244|Y4200_ARATH Uncharacterized protein At4g02000; TrEMBL-Plants: tr|A0A061ELV8|A0A061ELV8_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0017500_LC LjG1.1_chr2 5997898 6005811 -
2 domain predictions
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LotjaGi4g1v0031100_LC.1
n.a. Ta11-like non-LTR retrotransposon; TAIR: AT3G42140.1 zinc ion binding / nucleic acid binding protein; Swiss-Prot: sp|A8TX70|CO6A5_HUMAN Collagen alpha-5(VI) chain; TrEMBL-Plants: tr|S8DGP6|S8DGP6_9LAMI Uncharacterized protein; Found in the gene: LotjaGi4g1v0031100_LC LjG1.1_chr4 3859810 3860763 -
2 domain predictions
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LotjaGi4g1v0088800_LC.1
n.a. Ta11-like non-LTR retrotransposon; TAIR: AT5G36228.1 nucleic acid binding / zinc ion binding protein; Swiss-Prot: sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1; TrEMBL-Plants: tr|I3T1V9|I3T1V9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0088800_LC LjG1.1_chr4 11814475 11817170 -
2 domain predictions
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LotjaGi4g1v0172400_LC.1
n.a. Ta11-like non-LTR retrotransposon; TAIR: AT3G31430.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q6Q151|CYP59_ARATH Peptidyl-prolyl cis-trans isomerase CYP59; TrEMBL-Plants: tr|A0A199UAY2|A0A199UAY2_MANES Uncharacterized protein; Found in the gene: LotjaGi4g1v0172400_LC LjG1.1_chr4 34246545 34247673 -
2 domain predictions
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LotjaGi4g1v0190200_LC.1
n.a. Zinc finger, CCHC-type-like protein; TAIR: AT5G36228.1 nucleic acid binding / zinc ion binding protein; Swiss-Prot: sp|O04244|Y4200_ARATH Uncharacterized protein At4g02000; TrEMBL-Plants: tr|B9SLI2|B9SLI2_RICCO Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0190200_LC LjG1.1_chr4 43596398 43597073 +
2 domain predictions
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LotjaGi4g1v0312300_LC.1
n.a. Zinc finger protein; TAIR: AT5G36225.1 zinc knuckle protein; Swiss-Prot: sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP; TrEMBL-Plants: tr|A0A0B2PNF8|A0A0B2PNF8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0312300_LC LjG1.1_chr4 68922616 68922964 -
2 domain predictions
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LotjaGi5g1v0024400_LC.1
n.a. Zinc finger, CCHC-type-like protein; TAIR: AT3G42140.1 zinc ion binding / nucleic acid binding protein; Swiss-Prot: sp|B2FL98|KMO_STRMK Kynurenine 3-monooxygenase; TrEMBL-Plants: tr|A0A0K9RB45|A0A0K9RB45_SPIOL Uncharacterized protein; Found in the gene: LotjaGi5g1v0024400_LC LjG1.1_chr5 4287000 4287604 +
2 domain predictions
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LotjaGi5g1v0113200_LC.1
n.a. Ta11-like non-LTR retrotransposon; TAIR: AT3G31430.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|O04244|Y4200_ARATH Uncharacterized protein At4g02000; TrEMBL-Plants: tr|M5W5K8|M5W5K8_PRUPE Uncharacterized protein; Found in the gene: LotjaGi5g1v0113200_LC LjG1.1_chr5 22549823 22553307 -
2 domain predictions
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LotjaGi5g1v0300300.1
n.a. Gag polyprotein; TAIR: AT5G52380.1 VASCULAR-RELATED NAC-DOMAIN 6; Swiss-Prot: sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c; TrEMBL-Plants: tr|K7N3Q9|K7N3Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0300300 LjG1.1_chr5 61744420 61747970 +
2 domain predictions
 –