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Lj3g3v1048970.1

Overview

Field	Value
Gene ID	Lj3g3v1048970
Transcript ID	Lj3g3v1048970.1
Lotus japonicus genome version	MG20 v3.0
Description	Uncharacterized protein TCM_020721 [Theobroma cacao] gi\|508713924\|gb\|EOY05821.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31286:SF1 View details on PTHR31286:SF1 Search for proteins/transripts with this domain View external data on PTHR31286:SF1	1	197	197	5.10E-30	–
PANTHER	PTHR31286 View details on PTHR31286 Search for proteins/transripts with this domain View external data on PTHR31286	1	197	197	5.10E-30	–
Pfam	PF14111 View details on PF14111 Search for proteins/transripts with this domain View external data on PF14111	1	106	106	9.70E-20	IPR025558 Show description in modal box View details on IPR025558 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF14392 View details on PF14392 Search for proteins/transripts with this domain View external data on PF14392	116	163	48	1.40E-08	IPR025836 Show description in modal box View details on IPR025836 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50158 View details on PS50158 Search for proteins/transripts with this domain View external data on PS50158	149	162	14	8.812	IPR001878 Show description in modal box View details on IPR001878 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	179	285	107	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	299	342	44	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v1048970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1048970.1, powered by CORGI.

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