Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0300300 |
| Transcript ID | LotjaGi5g1v0300300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gag polyprotein; TAIR: AT5G52380.1 VASCULAR-RELATED NAC-DOMAIN 6; Swiss-Prot: sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c; TrEMBL-Plants: tr|K7N3Q9|K7N3Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0300300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61744420..61747970) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAAACAATGGGGGTAAAAAGGAAAAGAAGAAGAAAAACCCTTTGGATTTGTCTTGCGGCCGCACTCAGCACCAGTTC CTTCGAAAAACGGTGGCGGCGATAGAGAAACCCTTGCACTTGCTTGCTCGTTATCAGAGATGGTGAGCCAACGGCAGCGA CTCGCTCGGAAGCGGTTCAAAGCAGAGAACCCTGAACTCTTCCCCAAACCAGAACCCACACCCCCAAAAGACCCTGACAA GAAGAAGAAGAAGAAGAGAAAAACCACCCCGTTCAAGCGCACAAAGGATGATTCAAAGGGAGTCAAAAGCAATTCCAGAA AACACCCTCTTCGTGTTCCCGGTATGAGGCCCGGCGAGACCTGTTTCATCTGCAAGGCTAGAGACCATATCGCCAAGCTC TGTCCTGAAAAAGCTGAATGGGAAAAGAACAAGGTTTGGTTCTGATCAATGCTGTATTGTTAGTTGATATGTTGCGGAGT GTTTTGGTCACTGGAGTTGTTAGAAACAGTTAAGAAATAATGGGCATGCTCTATTTGATGAAATTAGTTGATAGGTTTGT TGATGATGTAACTGGATTACTGGATTTTTTGTGATTTGATGGAATGGTGTTTGGTATTTTCAGATATGTTTGCGGTGTCG GCGACGTGGTCATAGAGCTCAGAACTGTCCTGAGGTGAAAGATGGCCCCAAGGATGGGAAATTCTGCTATAACTGTGGGG AAACTGGGCACCCGCTTTCGAATTGTCCGCAGCCTCTTCAAGAAGGTTTGTTAATATATGTCTTTTGTATGCTCTCTGTG ATGTTTGAGTGTCAGTTTGAAAACCTGGTAGGTTTACTTGCTGGGGGTATAAGTGATTCTGAGAGGTTTAGTGTGTGTTT GGTTGAGTGGTTGTCGCAAAAGCTAATGCACTTATCCTCAAGTGATTCTGTGAGGTTTAGTGTGTCTTTGGTTGAGTGTG GTTGGCAGTTGGCACAAAAGCTACACCAAGGAGCTTCTAGCTAGAATTGATTTTCAATAGCTAAAACAAACACATATTAA AGATTAATTGTGTAGTTTAAACATGCTGGTTTGTGTTATATCTAAGCATGGCATGTTGAAACTTGAAACCTATCAAGTTA GATATGTTATAGCATGCACATTGCTGGTTTTGGAGTTTCCAATTGAAATTTTGAATTTAATATGTAGCAGTTCTTTAATT TCCTTTATCATGATATAGTAAAGGGTTTTATTGGTGATGCAGGAGGGACAAAGTTTGCTGAATGCTTTGTCTGTAAACAA CGTGGACACTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATTTACCCAAAGGTAATCATTTCTCTTTCCAGTTGACC TTGTCCCTTGCAAGCTGTGTCTAATCTGTTACAGCTATTTATTTGTGATAGGGTGGTTCTTGTAAAATATGTGGTGGTGT GACACATTTGGCCAAGGATTGTCCTGACAAAGGGAACAGAGGATCTGTTGCTGCTAATAGGCCTCTTCGTATATGTAAGC TTTTTCAGAAGAAACTTCATGGATTTTCTACTGCTATATTTCTGGTTTTGAAATCAAATGCTGTTTTTGTTTACTTGTTT GCATCCATGTTCCTTTCTGCATTTGCTTCTCTAAACCTATGGACTATGGTTGACACTGGCCCCATTTTTCCTCTATTGAG CTGCATTGTCTAAAAGTATAGTAATGTCTGAGTTCTGACCTTAAATGTAAATTAACTTCAAGTACTGGATGTTCCCTGTT TTTGGTCCAATGCCATGTGATACTTTTGCGCGATGACCTAAATTAGAACAGTTAAACCTTAAACGTGTGATACTTTTGCC AGGATGACCTAAATTAGAACAGTTAAACGTGCTACAAATTAGTGATACTTTTGCTCGAAAGTCTATTAGTTTAGTTCGAA GCAAATGCTATTGAGTAATGGCATATCATGTAGTGGCTGATTGAGCTGAATAAGGGTTCTTTATATTTGAGATGTTTGAG ATTACTCAAGTCTTGTCGTGATACACTGATAGATTTTGGTTGATTGCATATCATGTTAAACTTGGGATTCATTAAATATC AGATATTAGGGAACATAGTTTGTCAGTTATTATAGGCTTCAAACTTGATAGTCACGAGGACATATAAAAGCTTCTTGATT TTATTGGTTGCTGATCTCATTTTAAAAAGGGCAATCTAATGCTATGAAGCTTCCATCATGACTGGATCCAGGGAAGGTTT GGCTCATTGCGAGTCTATTCCCGTTTGGATGTGGATCAAACAACACTTACTGGAGCTTATCTACTAAAAACAAGCACTAG ATAAGCTCAAATAAGTGCTCTTTGGTCTTGCATCCAAATGGGCACAACACAACCTTACTTTGCATTTTTAAGAGAGTGAT CCCACAACTTAAACATATGAACTCTTACTCTCTTAGCCACATGGCAGTAACTCCGACTATTTACATCAAGCCTCCCCCTT TTTAGCTAACTTTATTTTGCCTAATTTGTTTAGGTGCACCGTTCTTATTTCAAAGTAATGACTACCTTTGTTTTAATCCT TGTTTGAGATGTCACCCATGAAGAGATGGTGTTGTATTGTAATCAAGCAAGGGGAGTAATATGCACCTCTTTTAAATACT TGGACTCGTGCCAAGCATGGGTTGAAGTCTTTCTTTGAACACAAATGTTCATCATAGAAATCCAAATGAACTAAATTATT TGGAATGAAGTATGTACGCTAAATGTAACTTCTTGCAAGTGATCTCTTGCTCCTCTTGCCTTAGCCGGAGCTCTTTCTAT ATATGTCAAATTTAATTGCTTTCACAATATAAAATATCTCAGTCACTACACTAGTTATTAAATATGGCTGATAATTCTAT TCTTTCTTTCAGCATCGAGAACTGAAGAGAGGCCCAGTAGTCATACCAGATTTGTGAGCGGGGATGACATGGAGGACGAC TTCATGGCAGATGACATAAATAGTGGTGACAAGAACACGTCCTCAAACTCAAAAGATGGCCATGTAAAACCGAAGAAGGG TCCTAAAGTTGTTAACTTTTAACCAAGGATATTACCTGTCAATGCATTTAATGGATTTGATTTCTACTCTCCATTTGCTT TCTTCTTCTATACTTAAGCCTGTACTCTGCAGAATCTCATCCAGAATGAAGGCTGCATCTGCAAATCTTGGGTTGCCTTG AAGTTTGGAGAGTTGGCTTGAAAATTTTGCTCCTTATTGGTCATTTATCCTAGAGTTCTCTAAAAAAGGAAACTAAAAAT GTAACAATATATTCTTGGGTACATTTACTAGGTCACTGTATTTGCTTTTTAGTCTTTTTATTTACTTATTAAGGTTCATT TTGTTGCATTATTTCTAAATACTTTATCTTTGAAAAAGGTTGATGTTATATGAACAACCTTTAGATGCAAAAACTCACAG TTGTCAAATTTCACCCTTTAATGATTGATTTTAATTTTTTAATTATTAAATACACAAAAATCAATGGTTAGATGTGTAAT CTTTACATGGTCAATATATATATATTTTTAC
CDS sequence (LotjaGi5g1v0300300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGCCAACGGCAGCGACTCGCTCGGAAGCGGTTCAAAGCAGAGAACCCTGAACTCTTCCCCAAACCAGAACCCAC ACCCCCAAAAGACCCTGACAAGAAGAAGAAGAAGAAGAGAAAAACCACCCCGTTCAAGCGCACAAAGGATGATTCAAAGG GAGTCAAAAGCAATTCCAGAAAACACCCTCTTCGTGTTCCCGGTATGAGGCCCGGCGAGACCTGTTTCATCTGCAAGGCT AGAGACCATATCGCCAAGCTCTGTCCTGAAAAAGCTGAATGGGAAAAGAACAAGATATGTTTGCGGTGTCGGCGACGTGG TCATAGAGCTCAGAACTGTCCTGAGGTGAAAGATGGCCCCAAGGATGGGAAATTCTGCTATAACTGTGGGGAAACTGGGC ACCCGCTTTCGAATTGTCCGCAGCCTCTTCAAGAAGGAGGGACAAAGTTTGCTGAATGCTTTGTCTGTAAACAACGTGGA CACTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATTTACCCAAAGGGTGGTTCTTGTAAAATATGTGGTGGTGTGAC ACATTTGGCCAAGGATTGTCCTGACAAAGGGAACAGAGGATCTGTTGCTGCTAATAGGCCTCTTCGTATATCATCGAGAA CTGAAGAGAGGCCCAGTAGTCATACCAGATTTGTGAGCGGGGATGACATGGAGGACGACTTCATGGCAGATGACATAAAT AGTGGTGACAAGAACACGTCCTCAAACTCAAAAGATGGCCATGTAAAACCGAAGAAGGGTCCTAAAGTTGTTAACTTTTA A
Protein sequence (LotjaGi5g1v0300300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSQRQRLARKRFKAENPELFPKPEPTPPKDPDKKKKKKRKTTPFKRTKDDSKGVKSNSRKHPLRVPGMRPGETCFICKA RDHIAKLCPEKAEWEKNKICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGHPLSNCPQPLQEGGTKFAECFVCKQRG HLSKNCPQNAHGIYPKGGSCKICGGVTHLAKDCPDKGNRGSVAANRPLRISSRTEERPSSHTRFVSGDDMEDDFMADDIN SGDKNTSSNSKDGHVKPKKGPKVVNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 3.7E-114 | – | |
| MobiDBLite | 1 | 67 | 67 | - | – | |
| SUPERFAMILY | 67 | 116 | 50 | 1.07E-7 | ||
| Gene3D | 69 | 122 | 54 | 3.7E-9 | – | |
| SMART | 74 | 90 | 17 | 0.017 | ||
| Pfam | 98 | 114 | 17 | 0.18 | ||
| SMART | 99 | 115 | 17 | 0.028 | ||
| ProSiteProfiles | 100 | 115 | 16 | 9.257 | ||
| SUPERFAMILY | 119 | 170 | 52 | 3.3E-11 | ||
| Gene3D | 123 | 178 | 56 | 8.1E-14 | – | |
| SMART | 125 | 141 | 17 | 0.0067 | ||
| ProSiteProfiles | 126 | 141 | 16 | 10.23 | ||
| Pfam | 126 | 141 | 16 | 1.4E-4 | ||
| SMART | 152 | 168 | 17 | 7.7E-4 | ||
| Pfam | 153 | 168 | 16 | 1.6E-4 | ||
| ProSiteProfiles | 153 | 168 | 16 | 9.603 | ||
| SMART | 179 | 195 | 17 | 0.031 | ||
| Pfam | 179 | 194 | 16 | 0.44 | ||
| MobiDBLite | 194 | 266 | 73 | - | – | |
| MobiDBLite | 210 | 230 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0300300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…