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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032795
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 50 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.468s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063469.1
n.a. Uncharacterized protein TCM_015048 [Theobroma cacao] gi|508775784|gb|EOY23040.1| chr0 21550422 21555728 -
2 domain predictions
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Lj0g3v0063469.2
n.a. Uncharacterized protein TCM_015048 [Theobroma cacao] gi|508775784|gb|EOY23040.1| chr0 21551480 21556086 -
2 domain predictions
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Lj0g3v0064829.1
n.a. Uncharacterized protein TCM_041604 [Theobroma cacao] gi|508786446|gb|EOY33702.1| chr0 22476504 22478114 +
2 domain predictions
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Lj0g3v0104479.1
n.a. PREDICTED: protein LONGIFOLIA 1-like [Cicer arietinum] gi|502178002|ref|XP_004516159.1| chr0 44712429 44718529 +
2 domain predictions
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Lj0g3v0203309.1
n.a. expressed protein [Oryza sativa Japonica Group] gi|108706010|gb|ABF93805.1| chr0 100760984 100765343 +
2 domain predictions
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Lj0g3v0308129.1
n.a. PREDICTED: uro-adherence factor A-like isoform X1 [Cicer arietinum] gi|502110317|ref|XP_004493852.1| chr0 160867265 160872053 -
2 domain predictions
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Lj0g3v0352529.1
n.a. n.a. chr0 185417151 185421427 +
2 domain predictions
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Lj0g3v0352539.1
n.a. Uncharacterized protein TCM_034025 [Theobroma cacao] gi|508722845|gb|EOY14742.1| chr0 185417151 185422716 -
2 domain predictions
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Lj1g3v2337900.1
n.a. Uncharacterized protein TCM_021678 [Theobroma cacao] gi|508715282|gb|EOY07179.1| chr1 27626772 27628734 -
2 domain predictions
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Lj1g3v3025190.1
n.a. PREDICTED: protein LONGIFOLIA 1-like [Cicer arietinum] gi|502126865|ref|XP_004499469.1| chr1 34640125 34643689 -
2 domain predictions
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Lj1g3v3300040.1
n.a. Uncharacterized protein TCM_019426 [Theobroma cacao] gi|508712268|gb|EOY04165.1| chr1 36964175 36969694 -
2 domain predictions
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Lj1g3v4538790.1
n.a. PREDICTED: uro-adherence factor A-like isoform X1 [Cicer arietinum] gi|502110317|ref|XP_004493852.1| chr1 53539601 53545443 +
2 domain predictions
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Lj1g3v4538790.2
n.a. PREDICTED: uro-adherence factor A-like isoform X1 [Cicer arietinum] gi|502110317|ref|XP_004493852.1| chr1 53539601 53544681 +
2 domain predictions
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Lj1g3v4578340.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508715731|gb|EOY07628.1| chr1 54096786 54104540 +
2 domain predictions
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Lj1g3v4578340.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508715731|gb|EOY07628.1| chr1 54096867 54099885 +
2 domain predictions
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Lj1g3v4779510.1
n.a. PREDICTED: serine-rich adhesin for platelets-like [Cicer arietinum] gi|502113085|ref|XP_004494537.1| chr1 57605370 57610235 +
2 domain predictions
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Lj2g3v1092890.1
n.a. PREDICTED: protein LONGIFOLIA 1-like [Cicer arietinum] gi|502091187|ref|XP_004489470.1| chr2 17710529 17716387 -
2 domain predictions
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Lj2g3v2277510.1
n.a. Uncharacterized protein TCM_041604 [Theobroma cacao] gi|508786446|gb|EOY33702.1| chr2 33273978 33275569 -
2 domain predictions
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Lj3g3v1605130.1
n.a. PREDICTED: serine-rich adhesin for platelets-like [Cicer arietinum] gi|502113085|ref|XP_004494537.1| chr3 20434392 20438559 -
2 domain predictions
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Lj4g3v0473060.1
n.a. Uncharacterized protein TCM_014522 [Theobroma cacao] gi|508775052|gb|EOY22308.1| chr4 7145679 7147346 +
2 domain predictions
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Lj5g3v0615020.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508715731|gb|EOY07628.1| chr5 7494926 7503489 +
2 domain predictions
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Lj5g3v2029570.1
n.a. Uncharacterized protein TCM_015048 [Theobroma cacao] gi|508775784|gb|EOY23040.1| chr5 28727198 28729963 +
2 domain predictions
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Lj6g3v1538070.1
n.a. Uncharacterized protein TCM_021314 [Theobroma cacao] gi|508714761|gb|EOY06658.1| chr6 17666873 17672182 +
2 domain predictions
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LotjaGi1g1v0119700.1
n.a. Ribonuclease H; TAIR: AT5G58630.1 hypothetical protein; Swiss-Prot: sp|P11533|DMD_CHICK Dystrophin; TrEMBL-Plants: tr|V7B8J6|V7B8J6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0119700 LjG1.1_chr1 18868662 18870611 +
2 domain predictions
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LotjaGi1g1v0212800.1
n.a. Longifolia protein; TAIR: AT1G74160.1 LONGIFOLIA protein; Swiss-Prot: sp|Q9S823|LNG2_ARATH Protein LONGIFOLIA 2; TrEMBL-Plants: tr|K7KKG4|K7KKG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212800 LjG1.1_chr1 46844349 46852188 +
2 domain predictions
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LotjaGi1g1v0212800.2
n.a. Longifolia protein; TAIR: AT1G74160.1 LONGIFOLIA protein; Swiss-Prot: sp|Q9S823|LNG2_ARATH Protein LONGIFOLIA 2; TrEMBL-Plants: tr|K7KKG4|K7KKG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212800 LjG1.1_chr1 46844410 46852169 +
2 domain predictions
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LotjaGi1g1v0548400.1
n.a. DUF4378 domain protein; TAIR: AT1G67040.1 DnaA initiator-associating protein; Swiss-Prot: sp|B9DIX2|AMPA_STACT Probable cytosol aminopeptidase; TrEMBL-Plants: tr|I1N5B1|I1N5B1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0548400 LjG1.1_chr1 107824394 107830089 -
2 domain predictions
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LotjaGi1g1v0653200.1
n.a. GPI-anchored adhesin-like protein; TAIR: AT3G56810.1 hypothetical protein; Swiss-Prot: sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270; TrEMBL-Plants: tr|G7L3Q5|G7L3Q5_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0653200 LjG1.1_chr1 121254250 121258468 -
2 domain predictions
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LotjaGi1g1v0697200.1
n.a. Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein; TAIR: AT3G53540.1 afadin; Swiss-Prot: sp|Q1ZXF3|C5172_DICDI Probable cytochrome P450 517A2; TrEMBL-Plants: tr|I1JPF1|I1JPF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0697200 LjG1.1_chr1 126495564 126501887 -
2 domain predictions
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LotjaGi1g1v0697200.2
n.a. Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein; TAIR: AT3G53540.1 afadin; Swiss-Prot: sp|Q1ZXF3|C5172_DICDI Probable cytochrome P450 517A2; TrEMBL-Plants: tr|K7KFP7|K7KFP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0697200 LjG1.1_chr1 126495565 126501888 -
2 domain predictions
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LotjaGi1g1v0701300.1
n.a. methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); TAIR: AT4G28760.1 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); Swiss-Prot: sp|Q9LF24|LNG1_ARATH Protein LONGIFOLIA 1; TrEMBL-Plants: tr|I1N9Y1|I1N9Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0701300 LjG1.1_chr1 126940432 126946503 -
2 domain predictions
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LotjaGi1g1v0701300.2
n.a. methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); TAIR: AT4G28760.1 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); Swiss-Prot: sp|Q9LF24|LNG1_ARATH Protein LONGIFOLIA 1; TrEMBL-Plants: tr|I1N9Y1|I1N9Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0701300 LjG1.1_chr1 126941130 126945385 -
2 domain predictions
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LotjaGi1g1v0747600.1
n.a. GPI-anchored adhesin-like protein; TAIR: AT5G26910.1 GPI-anchored adhesin-like protein; Swiss-Prot: sp|Q9FHK7|Y5516_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g05160; TrEMBL-Plants: tr|A0A0B2P3P2|A0A0B2P3P2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0747600 LjG1.1_chr1 132028311 132033018 +
2 domain predictions
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LotjaGi2g1v0074600.1
n.a. GPI-anchored adhesin-like protein, putative (DUF3741); TAIR: AT1G67040.2 DnaA initiator-associating protein; Swiss-Prot: sp|P28921|TRX2_EHV1B Triplex capsid protein 2; TrEMBL-Plants: tr|I1N5B1|I1N5B1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0074600 LjG1.1_chr2 19459254 19465054 +
2 domain predictions
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LotjaGi2g1v0151300.1
n.a. DUF4378 domain protein; TAIR: AT5G62170.1 LOW protein: M-phase inducer phosphatase-like protein; Swiss-Prot: sp|Q9LF24|LNG1_ARATH Protein LONGIFOLIA 1; TrEMBL-Plants: tr|A0A0B2QSG6|A0A0B2QSG6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0151300 LjG1.1_chr2 54560010 54564988 +
2 domain predictions
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LotjaGi2g1v0354700.1
n.a. RB1-inducible coiled-coil protein 1, putative isoform 1; TAIR: AT2G17550.1 RB1-inducible coiled-coil protein; Swiss-Prot: sp|A8FD22|CYSH_BACP2 Phosphoadenosine phosphosulfate reductase; TrEMBL-Plants: tr|A0A0B2RS70|A0A0B2RS70_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0354700 LjG1.1_chr2 83098495 83104675 -
2 domain predictions
 –
LotjaGi2g1v0354700.2
n.a. RB1-inducible coiled-coil protein 1, putative isoform 1; TAIR: AT2G17550.1 RB1-inducible coiled-coil protein; Swiss-Prot: sp|A8FD22|CYSH_BACP2 Phosphoadenosine phosphosulfate reductase; TrEMBL-Plants: tr|K7LNP3|K7LNP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0354700 LjG1.1_chr2 83098495 83104675 -
2 domain predictions
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LotjaGi2g1v0354700.3
n.a. RB1-inducible coiled-coil protein 1, putative isoform 1; TAIR: AT2G17550.1 RB1-inducible coiled-coil protein; Swiss-Prot: sp|A8FD22|CYSH_BACP2 Phosphoadenosine phosphosulfate reductase; TrEMBL-Plants: tr|A0A0B2RS70|A0A0B2RS70_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0354700 LjG1.1_chr2 83098792 83104491 -
2 domain predictions
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LotjaGi3g1v0193800.1
n.a. sn-glycerol-3-phosphate-binding periplasmic protein UgpB; TAIR: AT5G01370.1 ALC-interacting protein 1; Swiss-Prot: sp|A6GWM2|DPP11_FLAPJ Asp/Glu-specific dipeptidyl-peptidase; TrEMBL-Plants: tr|V7ANB3|V7ANB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0193800 LjG1.1_chr3 28068411 28070678 -
2 domain predictions
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LotjaGi4g1v0135400.1
n.a. RB1-inducible coiled-coil protein 1, putative isoform 1; TAIR: AT2G17550.1 RB1-inducible coiled-coil protein; Swiss-Prot: sp|Q8W4Q3|PIRL3_ARATH Plant intracellular Ras-group-related LRR protein 3; TrEMBL-Plants: tr|A0A0B2RS70|A0A0B2RS70_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0135400 LjG1.1_chr4 19765783 19770771 -
2 domain predictions
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LotjaGi4g1v0135400.2
n.a. RB1-inducible coiled-coil protein 1, putative isoform 1; TAIR: AT2G17550.1 RB1-inducible coiled-coil protein; Swiss-Prot: sp|Q8W4Q3|PIRL3_ARATH Plant intracellular Ras-group-related LRR protein 3; TrEMBL-Plants: tr|A0A0B2RS70|A0A0B2RS70_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0135400 LjG1.1_chr4 19765810 19770682 -
2 domain predictions
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LotjaGi4g1v0465900.1
n.a. Cytochrome c oxidase subunit 3; TAIR: AT5G42710.1 hypothetical protein; Swiss-Prot: sp|P49444|PP2C1_PARTE Protein phosphatase 2C 1; TrEMBL-Plants: tr|K7L554|K7L554_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0465900 LjG1.1_chr4 83662024 83668429 -
2 domain predictions
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LotjaGi5g1v0070600.1
n.a. Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein; TAIR: AT3G53540.1 afadin; Swiss-Prot: sp|F4HSD5|TRM32_ARATH Protein TRM32; TrEMBL-Plants: tr|A0A1J7IMK2|A0A1J7IMK2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0070600 LjG1.1_chr5 11644031 11652802 +
2 domain predictions
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LotjaGi5g1v0150500.1
n.a. methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); TAIR: AT4G28760.1 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); Swiss-Prot: sp|Q9FLN0|GLIP1_ARATH GDSL esterase/lipase 1; TrEMBL-Plants: tr|K7LZF7|K7LZF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0150500 LjG1.1_chr5 39208548 39214107 -
2 domain predictions
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LotjaGi5g1v0150500.2
n.a. methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); TAIR: AT4G28760.1 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); Swiss-Prot: sp|Q9FLN0|GLIP1_ARATH GDSL esterase/lipase 1; TrEMBL-Plants: tr|K7LZF7|K7LZF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0150500 LjG1.1_chr5 39208696 39213569 -
2 domain predictions
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LotjaGi5g1v0150500.3
n.a. methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); TAIR: AT4G28760.1 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741); Swiss-Prot: sp|Q9FLN0|GLIP1_ARATH GDSL esterase/lipase 1; TrEMBL-Plants: tr|K7LZF7|K7LZF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0150500 LjG1.1_chr5 39208820 39212978 -
2 domain predictions
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LotjaGi5g1v0305800.1
n.a. Protein LONGIFOLIA 1; TAIR: AT5G62170.1 LOW protein: M-phase inducer phosphatase-like protein; Swiss-Prot: sp|Q9S823|LNG2_ARATH Protein LONGIFOLIA 2; TrEMBL-Plants: tr|A0A0L9TZV0|A0A0L9TZV0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0305800 LjG1.1_chr5 62393642 62397125 +
2 domain predictions
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LotjaGi6g1v0130900.1
n.a. Insulinase (Peptidase family M16) family protein; TAIR: AT5G58630.1 hypothetical protein; Swiss-Prot: sp|F4HSD5|TRM32_ARATH Protein TRM32; TrEMBL-Plants: tr|A0A0B2PFA7|A0A0B2PFA7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0130900 LjG1.1_chr6 37133288 37135190 +
2 domain predictions
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LotjaGi6g1v0130900.2
n.a. Insulinase (Peptidase family M16) family protein; TAIR: AT5G58630.1 hypothetical protein; Swiss-Prot: sp|F4HSD5|TRM32_ARATH Protein TRM32; TrEMBL-Plants: tr|A0A0B2PFA7|A0A0B2PFA7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0130900 LjG1.1_chr6 37133408 37135206 +
2 domain predictions
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LotjaGi6g1v0255800.1
n.a. GPI-anchored adhesin-like protein; TAIR: AT5G26910.1 GPI-anchored adhesin-like protein; Swiss-Prot: sp|Q9LF24|LNG1_ARATH Protein LONGIFOLIA 1; TrEMBL-Plants: tr|A0A151RXU0|A0A151RXU0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0255800 LjG1.1_chr6 56862642 56868069 +
2 domain predictions
 –