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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR035901
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.805s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi3g1v0194300.1
n.a. Glutaredoxin; TAIR: AT2G38270.1 CAX-interacting protein 2; Swiss-Prot: sp|Q8H7F6|GRS16_ARATH Bifunctional monothiol glutaredoxin-S16, chloroplastic; TrEMBL-Plants: tr|V7AMR5|V7AMR5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0194300 LjG1.1_chr3 28190889 28193846 -
2 domain predictions
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LotjaGi3g1v0546700.1
n.a. Structure-specific endonuclease subunit slx1; TAIR: AT5G43210.1 Excinuclease ABC, C subunit, N-terminal; Swiss-Prot: sp|Q9P7M3|SLX1_SCHPO Structure-specific endonuclease subunit slx1; TrEMBL-Plants: tr|A0A151TLN7|A0A151TLN7_CAJCA Structure-specific endonuclease subunit slx1; Found in the gene: LotjaGi3g1v0546700 LjG1.1_chr3 96299040 96302879 +
3 domain predictions
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LotjaGi6g1v0010300.1
n.a. DNA mismatch repair protein mutS; TAIR: AT3G24320.1 MUTL protein homolog 1; Swiss-Prot: sp|Q84LK0|MSH1_ARATH DNA mismatch repair protein MSH1, mitochondrial; TrEMBL-Plants: tr|G7I6Q0|G7I6Q0_MEDTR DNA mismatch repair protein; Found in the gene: LotjaGi6g1v0010300 LjG1.1_chr6 1902355 1919852 +
2 domain predictions
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LotjaGi6g1v0104600.1
n.a. Structure-specific endonuclease subunit SLX1 homolog; TAIR: AT2G30350.2 Excinuclease ABC, C subunit, N-terminal; Swiss-Prot: sp|Q8BX32|SLX1_MOUSE Structure-specific endonuclease subunit SLX1; TrEMBL-Plants: tr|I1LLV5|I1LLV5_SOYBN Structure-specific endonuclease subunit SLX1 homolog; Found in the gene: LotjaGi6g1v0104600 LjG1.1_chr6 23017462 23025081 +
3 domain predictions
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