Transcript — View — Lotus Base

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LotjaGi3g1v0546700.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0546700
Transcript ID	LotjaGi3g1v0546700.1
Lotus japonicus genome version	Gifu v1.2
Description	Structure-specific endonuclease subunit slx1; TAIR: AT5G43210.1 Excinuclease ABC, C subunit, N-terminal; Swiss-Prot: sp\|Q9P7M3\|SLX1_SCHPO Structure-specific endonuclease subunit slx1; TrEMBL-Plants: tr\|A0A151TLN7\|A0A151TLN7_CAJCA Structure-specific endonuclease subunit slx1; Found in the gene: LotjaGi3g1v0546700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:96299040..96302879) extracted from Lotus japonicus Gifu genome v1.2.

AATCATTAAAAATCAAACTAGTTTTGGATTTTGAAAAAAGAAAATTGTTTTATTGAGGGTATGGGACTTATATTTGTTGA GTTGTTTGGCAGCCAGAAATGGGATGCGTCATGTCTATATTCTCACGCAATTTTGATGATTTGTTTTGTTGGTTACCCAC CCCATCCTATTCATTTGCGAAATTCATAAAATTTAATTTTGGTTTTTTGTATTCTAATTCGCTTTCAAAATAGTTCAAAA TCGATGAGAACGCTATGTAGGTCCTTTCGCTCCATGAAACGCCCAATTCCAAACCCTAATTTATCGAAATCATCATCGTC TCCTTCAAAACCAAAATCAGATTCATGGTGTGTTTATCTCATCCTCTCCACCAACCATCCCATCAAAACCTACGTAGGAG TCACCACCAATTTCCCTCGCCGGTAACTTCAATTTTACCCCTTTCTGAGCTATACGATAATGATGATATTGCAATCTCTG ATCCCGTTCCTTCCCACTGGGTGCTCAAATTTCATTTCTGCAATGAAACAGATCGTGCTTTTAATCAATTGTTGCTCTTG GAGCCTATGATTTATTTATTCCTTCTTGAGAATGCAGATTCATATCCTATCTAATCAGGCTAGAATAGTTTTAACTTTTC AATTAATCTGTTTTCTAATGTCAAATTAGCTAGAATTTGCTTTGTCTTTTGTTTTACAATTCTACTCATGTTTGCAGTTT TCCTCGAGTTAAGGAAATGATATATGTTTGTTTTATTTGTACCTTTCTTAATTGGTGTAGTTTGAAGCAGCATAATGGTC AACTTATAGGGGGTGCAAAAGCATCCCGGGCTGGAAGGCCGTGGATTTGTGCATGCGTCATTTGTGGTTTCACTAACCGA AGTGAAGGTATATGATTTTACTTTTTGTGTTCTTTTATTTGCATGAAGGTATCAACATAATTGTTTTCCCGTAATGGCGA AAGAAGATGTTGATGTAGTTGTATACAGTTTATATTTATATTATCTGTGGCCTCTATCCTTAAATATATTGTTGACAAGA TATTTAGGTGCTGTGAACATTCAATTCCGTAATGCCACTAATCAATAATTATAAGACTTTCAGTAGGAGTGTAGGACTAC TAGAAAGTGAAAAGGGAAGCTAATTAATCAACTTTTACATTTATGTTCTTTCAGTGGTATAGTGTTAGGGCGTTTGACTT AGTGGCTTAGTGCAATGAGTTTGATGAACATTAGTAATATTCTAAACTGTACAAATCTGTTGGAGCTAAGTGCTGACAAA TAAAATGATAGAAAGATCTTGATTTGCACTTCTCATCTTTACAGTAGTATTACTTGAATTGAGCTACAGAGCCATTTTAG TCAACCAATGATTGGTAATTTGGGATGATTATATCTTTGCCTCATGGTACTTTGGGATATGCAATTGAGTCATGGTACTA GCACAAAAATTACCCTGTAATAATGTCTCTAATATCTCTCTTTCCCGCTAACATCCTCTACAATAAATACCCTGAGAGCA TCCTTGCAGATAATATAATCCAGATATCTTTTACTGAATTGAGTAGGATATTATTCCTATGTATTAATTGCAAAATCTTT TTATGTTTGATCTGTTAAGGATTTCAACATTGCCATTTTCTCATAACTTTGCAGTTGATTTATTCTGTTTTGTTTCCCTT CCCCTTGTAGCCTGTGCATTTGAATCAAAATGGAAAGTTTTCTCAAGAAGATCTCCCCGCAAAAATCACAATGACAATCT CTCCAAGCAAAGTGAAGATCCATCACTTCCACTGCTGCGGCACAGGCAAGCAGCTTTAAATAAAGTGAAAGGTTCACTCG ACTGCACTCACTTAGAAATTAACTGGCATTTGGAGCCATCGTGATTCAACTGCCACAATTTTACATGTTTTATTTAGTAC GTGTTTGGATATACAATGGAAAATCACGGTAGATAGAAACAACTTCCCTTAGCTTTTGTGGCTATCCACTGTGATTTTGG CTTCACCGTGTATTCAAACATGCAGTTAATTGTGATGAATTCTACCTGCAAAATGTGGGCCAAATATTTAAATAACAACT GTACCATAGACATTGATTGATTCTTATAGTAATAGGTCTCTCTGTATAGCTTAAGCTTAAGAGTAATGAAAGATCATATG TAAGAAGAGTCGTTGAATGTATCAAGCATGAAATGCAACATTATTAATTTATTCAATAAAAAACCATATTTATACATCGT GGATCATGTATTGAAAAAGACAATAACATCTTCTGTTATTAAAATGCAAAGTCACAATGGTTCTATCTATTAAAAAAAGG GGAAAAGCCTCATAATGCAGAACTGAGGTTGTTGACAAACGCGCCTAAAGCATAGTATTCTTCAAACGCCTTAACATCAA TCTGGCACCGGATGAACTCCGGCAGGAACAGCCAAAAGCAGGTGGTGAAAACAAACCCTGCGGTCAACGGCCCCGATACA AACCTCGGCAGCCGCCACCTGGCATTGAGGGCCTTCTTCAACACAATCTCCAGCGTCAAGCACAGTCCATGGAGGACAAA GAAGCATGACATCCTGAACGTAGGTGCCATCCTCCCCATATAGAACAGTATCAGCTCATGCATCAAACCAGACACAACAA AAGTTGCCATCACTGCTGGTAGCGGAGCCCACGTGGAACCGACCACATTCCTGGCAGCTTTTAATGTTGGCTCATACACT GTAGGTCGCAGGATGCTGGTGACCATGAGATTCCACCTCCTGCCCCAGAAGTCTTGGAGTGAGGTTGATAGGATTGGATC ATTGAACTGTGGCTCAAGCTCCAACCCCAGTGTTGATCTGGCAAGTGCTGCCACAGTGGCTAAGATGATTTCCATCAGAA AGTAGATGTGGAAGCAGTACATGCCCATGATGAGTTTTGGGTGAATATAGTCACTGTAGTCATAGATTTTCACCAAAACC GCCACAAGAAGACCCTTTATGGCATACTGTAAAAATCGGTTGATGGAAGATGGGTTTTGTTTGATTTGGCTGCTAGTAGT ATTTGGCATTACTGAAGATGGGTCGGTTTCAAAATCGGGACTTTTGGACTCGTGTGATTTGCTCTGTTTTGTTTTGGAGC TATGTGATTGTTTTGGAGGTGGGTTTTGTTGGATCTTGATGGGGAGGCATGTAAGGGCTACAAAACGTCCTAGAGAGATT GATGGATCTGAGGACAAAGGACCCTTATTGAAAGCAAAGAGTATGAGCTTGAAATTTGCAAGCCAGGCAAAGAAGAATCC GATGTTGCCTGACAAATGTACAGAGGAAAAACTGAGAGGAATGAAGAGGTAGAAACAGATGATGGGAAGAAAAGAGAGAA GCCTTATTGTTCCTGCAGGGATAAATTTGCGGATCCAATAACAGTAGCATAAGGAAATGGCAACTGAGAGCCATATCTTG ATCAGATTGAACATGTTGCTCAATGTAAGCTTGAGAGAGAGCAATGCTTTAAGGTCAAGAGATGATGAAGGTTTGGTCAT GTAAACTATGTAAGGTTTGAGGTAAAGAAGACACAAAGATCCCAAACCATTGTGTGGTAAGAGGGAGTAATGATATATAC ACACCTCATTTATTAAACACTTCATCTTCACCTCTTTTTATTTCTATCTCCCTCCTCTTATCATCTATCACATTTCATAC TTTCTCTCTCTTACTTTTTCTTTTCTTTCTATCTCTTTCCTCATTCCACCTCTCTCCACCTCAAAGAGAGGTGTGGATAA AACATTATTCGGTAAGAGGTGATACATGGATGTGAAGTTTTCCAAATTCTTTATTCATGAACAGTAAGATTGATGTTGAC

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0546700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAACGCTATGTAGGTCCTTTCGCTCCATGAAACGCCCAATTCCAAACCCTAATTTATCGAAATCATCATCGTCTCC TTCAAAACCAAAATCAGATTCATGGTGTGTTTATCTCATCCTCTCCACCAACCATCCCATCAAAACCTACGTAGGAGTCA CCACCAATTTCCCTCGCCGTTTGAAGCAGCATAATGGTCAACTTATAGGGGGTGCAAAAGCATCCCGGGCTGGAAGGCCG TGGATTTGTGCATGCGTCATTTGTGGTTTCACTAACCGAAGTGAAGCCTGTGCATTTGAATCAAAATGGAAAGTTTTCTC AAGAAGATCTCCCCGCAAAAATCACAATGACAATCTCTCCAAGCAAAGTGAAGATCCATCACTTCCACTGCTGCGGCACA GGCAAGCAGCTTTAAATAAAGTGAAAGGTTCACTCGACTGCACTCACTTAGAAATTAACTGGCATTTGGAGCCATCGTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0546700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRTLCRSFRSMKRPIPNPNLSKSSSSPSKPKSDSWCVYLILSTNHPIKTYVGVTTNFPRRLKQHNGQLIGGAKASRAGRP WICACVICGFTNRSEACAFESKWKVFSRRSPRKNHNDNLSKQSEDPSLPLLRHRQAALNKVKGSLDCTHLEINWHLEPS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP_GRAM_POSITIVE	SignalP-TM View details on SignalP-TM Search for proteins/transripts with this domain	1	23	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	11	31	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	14	31	18	-	–
PANTHER	PTHR20208 View details on PTHR20208 Search for proteins/transripts with this domain View external data on PTHR20208	16	140	125	1.3E-50	–
PANTHER	PTHR20208:SF13 View details on PTHR20208:SF13 Search for proteins/transripts with this domain View external data on PTHR20208:SF13	16	140	125	1.3E-50	–
Gene3D	G3DSA:3.40.1440.10 View details on G3DSA:3.40.1440.10 Search for proteins/transripts with this domain View external data on G3DSA:3.40.1440.10	29	135	107	7.7E-15	IPR035901 Show description in modal box View details on IPR035901 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50164 View details on PS50164 Search for proteins/transripts with this domain View external data on PS50164	33	115	83	18.62	IPR000305 Show description in modal box View details on IPR000305 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF82771 View details on SSF82771 Search for proteins/transripts with this domain View external data on SSF82771	34	107	74	1.05E-7	IPR035901 Show description in modal box View details on IPR035901 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01541 View details on PF01541 Search for proteins/transripts with this domain View external data on PF01541	35	105	71	8.9E-14	IPR000305 Show description in modal box View details on IPR000305 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0546700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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