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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036227
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.155s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0405400.1
n.a. 50S ribosomal L15-like protein; TAIR: AT5G64670.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|A9H3K5|RL15_GLUDA 50S ribosomal protein L15; TrEMBL-Plants: tr|A0A072USD9|A0A072USD9_MEDTR 50S ribosomal L15-like protein; Found in the gene: LotjaGi1g1v0405400 LjG1.1_chr1 89449970 89454213 -
2 domain predictions
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LotjaGi1g1v0405400.2
n.a. 50S ribosomal L15-like protein; TAIR: AT5G64670.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|A9H3K5|RL15_GLUDA 50S ribosomal protein L15; TrEMBL-Plants: tr|A0A072USD9|A0A072USD9_MEDTR 50S ribosomal L15-like protein; Found in the gene: LotjaGi1g1v0405400 LjG1.1_chr1 89450519 89453153 -
2 domain predictions
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LotjaGi1g1v0405400.4
n.a. 50S ribosomal L15-like protein; TAIR: AT5G64670.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|A9H3K5|RL15_GLUDA 50S ribosomal protein L15; TrEMBL-Plants: tr|A0A072VEX9|A0A072VEX9_MEDTR 50S ribosomal L15-like protein; Found in the gene: LotjaGi1g1v0405400 LjG1.1_chr1 89450520 89453153 -
2 domain predictions
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LotjaGi1g1v0763800.1
n.a. 60S ribosomal protein L18; TAIR: AT3G05590.1 ribosomal protein L18; Swiss-Prot: sp|P42791|RL182_ARATH 60S ribosomal protein L18-2; TrEMBL-Plants: tr|I3SYW4|I3SYW4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0763800 LjG1.1_chr1 133648619 133650779 -
2 domain predictions
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LotjaGi1g1v0763800.2
n.a. 60S ribosomal protein L18; TAIR: AT3G05590.1 ribosomal protein L18; Swiss-Prot: sp|P42791|RL182_ARATH 60S ribosomal protein L18-2; TrEMBL-Plants: tr|I3SYW4|I3SYW4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0763800 LjG1.1_chr1 133649184 133650657 -
2 domain predictions
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LotjaGi1g1v0769700.1
n.a. 60S ribosomal protein L18; TAIR: AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|Q940B0|RL183_ARATH 60S ribosomal protein L18-3; TrEMBL-Plants: tr|I3TAM1|I3TAM1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0769700 LjG1.1_chr1 134205090 134207719 -
2 domain predictions
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LotjaGi1g1v0769700.2
n.a. 60S ribosomal protein L18; TAIR: AT3G05590.1 ribosomal protein L18; Swiss-Prot: sp|P42791|RL182_ARATH 60S ribosomal protein L18-2; TrEMBL-Plants: tr|I3TAM1|I3TAM1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0769700 LjG1.1_chr1 134205728 134207818 -
2 domain predictions
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LotjaGi1g1v0769700.3
n.a. 60S ribosomal protein L18; TAIR: AT3G05590.1 ribosomal protein L18; Swiss-Prot: sp|P42791|RL182_ARATH 60S ribosomal protein L18-2; TrEMBL-Plants: tr|I3TAM1|I3TAM1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0769700 LjG1.1_chr1 134205978 134207810 -
2 domain predictions
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LotjaGi2g1v0324700.1
n.a. 60S ribosomal protein L27a, putative; TAIR: AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3; TrEMBL-Plants: tr|I3SX58|I3SX58_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0324700 LjG1.1_chr2 79953420 79961385 -
2 domain predictions
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LotjaGi2g1v0324700.2
n.a. 60S ribosomal protein L27a, putative; TAIR: AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3; TrEMBL-Plants: tr|I3SX58|I3SX58_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0324700 LjG1.1_chr2 79960742 79961182 -
2 domain predictions
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LotjaGi4g1v0158100.1
n.a. 60S ribosomal protein L27A; TAIR: AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3; TrEMBL-Plants: tr|I3S7K3|I3S7K3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0158100 LjG1.1_chr4 27766070 27766516 -
2 domain predictions
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LotjaGi4g1v0229500.1
n.a. 60S ribosomal protein L27A; TAIR: AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3; TrEMBL-Plants: tr|K4C8P4|K4C8P4_SOLLC Uncharacterized protein; Found in the gene: LotjaGi4g1v0229500 LjG1.1_chr4 53926394 53928852 +
2 domain predictions
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LotjaGi4g1v0229500.2
n.a. 60S ribosomal protein L27A; TAIR: AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3; TrEMBL-Plants: tr|K4C8P4|K4C8P4_SOLLC Uncharacterized protein; Found in the gene: LotjaGi4g1v0229500 LjG1.1_chr4 53926397 53928202 +
2 domain predictions
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LotjaGi5g1v0225500.1
n.a. 60S ribosomal protein L18; TAIR: AT3G05590.1 ribosomal protein L18; Swiss-Prot: sp|P42791|RL182_ARATH 60S ribosomal protein L18-2; TrEMBL-Plants: tr|A0A1J7GRW1|A0A1J7GRW1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0225500 LjG1.1_chr5 53216263 53219537 +
2 domain predictions
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LotjaGi5g1v0225500.2
n.a. 60S ribosomal protein L18; TAIR: AT3G05590.1 ribosomal protein L18; Swiss-Prot: sp|P42791|RL182_ARATH 60S ribosomal protein L18-2; TrEMBL-Plants: tr|A0A1J7HJJ9|A0A1J7HJJ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0225500 LjG1.1_chr5 53216295 53218542 +
2 domain predictions
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LotjaGi5g1v0225500.3
n.a. 60S ribosomal protein L18; TAIR: AT3G05590.1 ribosomal protein L18; Swiss-Prot: sp|P42791|RL182_ARATH 60S ribosomal protein L18-2; TrEMBL-Plants: tr|A0A067HGY8|A0A067HGY8_CITSI Uncharacterized protein; Found in the gene: LotjaGi5g1v0225500 LjG1.1_chr5 53216360 53218542 +
2 domain predictions
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LotjaGi5g1v0339800.1
n.a. 50S ribosomal protein L15; TAIR: AT3G25920.1 ribosomal protein L15; Swiss-Prot: sp|P31165|RK15_PEA 50S ribosomal protein L15, chloroplastic; TrEMBL-Plants: tr|I3S518|I3S518_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0339800 LjG1.1_chr5 65697430 65700644 +
2 domain predictions
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LotjaGi5g1v0339800.2
n.a. 50S ribosomal protein L15; TAIR: AT3G25920.1 ribosomal protein L15; Swiss-Prot: sp|P31165|RK15_PEA 50S ribosomal protein L15, chloroplastic; TrEMBL-Plants: tr|I3S518|I3S518_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0339800 LjG1.1_chr5 65699315 65700164 +
2 domain predictions
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