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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0405400 |
| Transcript ID | LotjaGi1g1v0405400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal L15-like protein; TAIR: AT5G64670.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|A9H3K5|RL15_GLUDA 50S ribosomal protein L15; TrEMBL-Plants: tr|A0A072USD9|A0A072USD9_MEDTR 50S ribosomal L15-like protein; Found in the gene: LotjaGi1g1v0405400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89450519..89453153) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTAGAAGGAGGCTCTCTGCTCTCTCGACATCGATCATCAGAAGCTCAATTCACAGCAAACCTGTTATAAGACACCC ATCTATCCAACTTCACCCTGTGCAGTTCCCTCACTCTCGCAATGCTTATTCAGCATTTAATCCCAATACACTCCAGGGTT TTCAAGGTTTTAGAGCTTACAGTCTTCTGATGTTGAATGATCTGAGAGATAATGTTCCCAGAAAACAGAAGATAAGGAGG GGGCGTGGGATTGGGTCTGGAAAGGGAAAGACTGCTGGGTTCGGCCACAAAGGTCAGAGAGCCAGAAAAGGTTCGAAATT GGGGTTTGAAGGAGGCCAGACCCCTCTTCGTCGAAGAATGCCAAAACGTGGGTTCAAGAACCCTTTTAGCCTCACATTTC AGGTATATTTTCATGTTTGTATATGTTATTTTCTATTTGTTTTTATGCCTCAGGACATAGTGACCACCAAAAATGTATAC TTTCTTTTGGTGTGTTAAGAAAAGCTGCTGACCAATTTTTATACTAGTAGTTAAGGTATTTAATTTAGACTCTTACATGT ACCTAATTTTTTTGCTGCATCCTGGCAAATTACTGAACCTGATACAATCCTTTCATGGACCAAATGTATTTCCTGGAGGT CATGTTTGTTATTTGATGCACTTTTGCCCTGTAAACTTATTTTTCATAATTTAGTTGCTGAATAATGGAGGAAAAAGGAA AAGAGATATATTTTGGTCTATTGCCAAGTTGACCAGTTGCATCTCATGTGTGATTTACTATTTTTGCCATCTGGAAGACT CTATATGCCATTTCATGTAGTTGCCAGTACCAATAGACACAGGCCTATACTGTTGTTGTCTTTTAGAGCATGATCAATTA CATTTGGTTGAAATTTTGGAACATAGTAAGGAACTAAGGATGCTCTTTATAGCTTTGAGGCAGTTATTTTGTTAAAAGAT CGACTTAAAGATGGGAGTGGGTGTTTGCAAAAGATCAATCTTTTGGTCATCATTATCAGTTTCTCTTTTTTTGGTGTATT TCTATCATTTTGAGAAATGAAATATTACATAAGAAACAGTCCTGATAACCTTCTTTTGAAGCTAAAGTGCTATGCTTAAT GCAGATATTAGGTGTTGTTTTTATTACAAGACATCATTTGCTTAATCCAATTTTTCTTTTCAAGACTACATTATCCTGTG AATATATATATTTTTGAGTGGCTAAGTTTGTTTTAATTGATATGAACCTTTCTTTTCCATTTGCCCATTGCCAAGCATGT CTTCACTTAAAGTATTGTGAGCGCTGACAGCAGATGTATGTCGGTTTATACTTAATTTAGTTAATTGTATTAAAGGGATC TTATCCCAGTCTGTTTTAACTATTTGTACTTTGTTTGTGATTGTTGATCTTATCCAATTGTTTTACCTATATACATTTAT AAGATGGTGAAGCCACGGCCATGACTTGATCTCTTTTATTTGGACACTCTGCTAGCGTTCAAACCTTCCCCCTCTCTTTC TCACTGGCTATTTTCATATTTTTTTATATCTGCTTTGCAGCCAGTAGGGTTGGGAAAAATCGCAAAGCTTATCAATGCAG GGAAGATAGATTCTTCTGAACTGATTACAATGAAAACACTCAAGGTTTGCTGATTGTTACCTCACTTCAAATGGAATTGT TTACTTCATGTGCTTCTGATCATTCTTCTGCTCATTATTATTATTACCGTAGGACTCAGGGGCAATAGGGAAGCAAATAC AAGATGGAGTACGGTTGATGGGGCGTGGCTCTGAACAGATTCTGTGGCCCATTCATCTAGAGGTAGAATATGATTACATT TTTTAAAAATGAACTGATCTTTTTCTAATGTCATATTTTCACGATTGGTCGTATCTAATCATCAATCTTACCTCATTAAA TAGAATATGATTACTTAAATAACGAATTGAGAGCCTGCTCTCTTTTTCTATTGGCAGCATAAACAATCAAAAGTGGGATC AGCCATGTTTTGACCTTGGCAAATGGAATGGTATACAAATGTTGTAGTATGTATCTAAACATTAAAGAACTAACTATTGG CTTGAGACTGCATTCAACCTCGAATTTGTTTTAAAAAAAGTTGATATTACTATTATCCTCATATCTTCAAAGTTTATATC TTCACAGTTTTCTAAAACTGTTTACAAATAACTCGCATGGTCTGTGATTATGGTTCTGTAATGTGCTATTGTTTGTCAAC AAGAAAGTAAATGCAAAATTGGTCCTTTTTTTGTTTAAAATACTAAATTATTAGTTATGCTTTGTAATTGTAATTTATAA ACTCATTAGGCTTAAAACCTGAGCATGCTTGTGATATGGTGAGATTACAGGTATCAAGGGTCACTGTTAGAGCTAAGGAA GCAGTTGAAGCAGCTGGTGGGTCTGTGAGAAAGGTGTATTACAATAAGTTGGGCTTTAAGGCACTGCTGAAGCCAGAATG GTTTGAAAAGAAGGGAAGATTGTTGCCTAAAGCAGCTAGACCTCCTCCAAAGCAAAAGGATAAAGTTGATAGCATTGGTC GGCTGCCTGCACCAACCAAGCCAATTCCATTTTTAGTTGAAGGAAGCAAAGATGTTCCCGTTTTATCAGCTTAAT
CDS sequence (LotjaGi1g1v0405400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAGAAGGAGGCTCTCTGCTCTCTCGACATCGATCATCAGAAGCTCAATTCACAGCAAACCTGTTATAAGACACCC ATCTATCCAACTTCACCCTGTGCAGTTCCCTCACTCTCGCAATGCTTATTCAGCATTTAATCCCAATACACTCCAGGGTT TTCAAGGTTTTAGAGCTTACAGTCTTCTGATGTTGAATGATCTGAGAGATAATGTTCCCAGAAAACAGAAGATAAGGAGG GGGCGTGGGATTGGGTCTGGAAAGGGAAAGACTGCTGGGTTCGGCCACAAAGGTCAGAGAGCCAGAAAAGGTTCGAAATT GGGGTTTGAAGGAGGCCAGACCCCTCTTCGTCGAAGAATGCCAAAACGTGGGTTCAAGAACCCTTTTAGCCTCACATTTC AGCCAGTAGGGTTGGGAAAAATCGCAAAGCTTATCAATGCAGGGAAGATAGATTCTTCTGAACTGATTACAATGAAAACA CTCAAGGACTCAGGGGCAATAGGGAAGCAAATACAAGATGGAGTACGGTTGATGGGGCGTGGCTCTGAACAGATTCTGTG GCCCATTCATCTAGAGGTATCAAGGGTCACTGTTAGAGCTAAGGAAGCAGTTGAAGCAGCTGGTGGGTCTGTGAGAAAGG TGTATTACAATAAGTTGGGCTTTAAGGCACTGCTGAAGCCAGAATGGTTTGAAAAGAAGGGAAGATTGTTGCCTAAAGCA GCTAGACCTCCTCCAAAGCAAAAGGATAAAGTTGATAGCATTGGTCGGCTGCCTGCACCAACCAAGCCAATTCCATTTTT AGTTGAAGGAAGCAAAGATGTTCCCGTTTTATCAGCTTAA
Protein sequence (LotjaGi1g1v0405400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRRRLSALSTSIIRSSIHSKPVIRHPSIQLHPVQFPHSRNAYSAFNPNTLQGFQGFRAYSLLMLNDLRDNVPRKQKIRR GRGIGSGKGKTAGFGHKGQRARKGSKLGFEGGQTPLRRRMPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKT LKDSGAIGKQIQDGVRLMGRGSEQILWPIHLEVSRVTVRAKEAVEAAGGSVRKVYYNKLGFKALLKPEWFEKKGRLLPKA ARPPPKQKDKVDSIGRLPAPTKPIPFLVEGSKDVPVLSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 6 | 14 | 9 | - | – | |
| PANTHER | 15 | 269 | 255 | 2.0E-105 | – | |
| Phobius | 15 | 20 | 6 | - | – | |
| PANTHER | 15 | 269 | 255 | 2.0E-105 | ||
| Phobius | 21 | 279 | 259 | - | – | |
| Hamap | 65 | 214 | 150 | 18.211 | ||
| TIGRFAM | 65 | 211 | 147 | 1.1E-37 | ||
| SUPERFAMILY | 73 | 215 | 143 | 8.5E-35 | ||
| MobiDBLite | 80 | 124 | 45 | - | – | |
| Pfam | 88 | 211 | 124 | 1.3E-30 | ||
| Gene3D | 133 | 253 | 121 | 1.7E-37 | – | |
| MobiDBLite | 237 | 255 | 19 | - | – | |
| MobiDBLite | 237 | 259 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of LotjaGi1g1v0405400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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