Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0324700.1

Overview

Field Value
Gene ID LotjaGi2g1v0324700
Transcript ID LotjaGi2g1v0324700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 60S ribosomal protein L27a, putative; TAIR: AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein; Swiss-Prot: sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3; TrEMBL-Plants: tr|I3SX58|I3SX58_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0324700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:79953420..79961385) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGCCCAGCTCCAAAACCAATTTCATGGCTGGCCCACGTAATTTGCTTTCCCATAAATACCCCGCCTCCATTTCAACA AACCCCACAAACCCTAGGGGCAAAACAGTAACCCATGTCAAGCATAAATAAATCACACCACACCAAACCCTAATTCTTGT TCTGCGGCCGAAACCAGAGGGAGGAGCAGCAAAGCAGGTAGAGATGACGACCCGTTTCAAGAAGAACAGGAAGAAGCGCG GCCACGTGAGCGCCGGTCACGGCCGTATCGGAAAGCACAGGAAGCATCCTGGAGGTCGCGGTAACGCCGGTGGCATGCAC CACCACCGCATCTTGTTCGACAAGTACCATCCTGGTTACTTCGGGAAAGTGGGTATGCGTTACTTCCACAAGCTCCGCAA CCAGTTTCACTGCCCCATTGTCAACATCGAGAAGCTCTGGTCTCTTCTCCCTCAGGATGTGAAGGACAAGGCCTCCAAGG ACGCTGCACCTGTGGTTGATGTTACCCAGTATGGATACTTTAAGGTGCTTGGCAAGGGTGTGTTGCCTTCCAACCAGCCC CTTGTTGTTAAGGCCAAGCTTGTCTCCAAGATCGCTGAGAAGAAGATCAAGGAAGCTGGTGGTGCTGTTGTTCTTACAGC TTAGTTTTAAATTTTGTTTGTTTATCCATTTTGCGGTTGTTTGCATACATCAGATATTGTTGGTTTTGTTTTGTTAACAT TTTATAATCTTAAGGGATATTGATGTTATGCTTTTCAGTATTGTTGGTTTATGAAACTGATTTTGAGTTACATGTTTTTG TTGCCTCAATGTTCAATTGTTATAGTTTATCATGTCAAATGGAATTATTGGATGCTTAGTTTCTGTTTTAATGCGGATTA TAGTTTGCATGGGCCTGGGTAAATGATATTGACTATTGATGGATTTGATGCTGAAGTTTTGCGAGCCTTTCGGTTTTTGC TTGTGCAATAGTGTGTTTTACATGACCACTTGACAGGATTGGTTTGGTAAAGCTATGAATTTGATTAGAATTTTATAGCC ATAGGTTGGATTGAGCTGCTTTACAGTTGTACATCTAGAGGATTCTTATTACCTGATAGCATTTCTAGTCTGATTTCAAA TGTGGATTTTCAGTCTGCTGATTCAAAATTTCAGTTTTCGCCGTGTATTTTGTTCTTCTGTTGTTTAAGGTCCCTGCATC TTGATATCTTCTCATGTCATTGTGCCCGTAAGACACCGTAGTGCTTGTAGTTGGTATGTATGTTACTTTATGCAGGGGAA AGGTTTCTGTGTAGTCCTGTTTGAGGTCGTCTAGGAATATGCTTTTATGGTTCTTTAGCATTTAACAAGTGCAAACAAAC ATGTCATCTCTGCACCAGTTATTATAAGCTTGCTATGATTTAAGAATGAATGTTAGCTGAGAAATATGTAACCAAGCACT AGATCAGACTAGAAATGGACATACTTTGGTGATCGGACTCAACCTGTGGTTCAGCACCACAACTTCTTTGAGAAGCCCCT TGATGACACGGCCTCCTTCAAACTAGTAATCTCCAAAACAGTGAAAAGAATTTGTGTTTCCTCTCTAGGTACAGTGATTT GGAATTATCTTTTATTGTGTCGTGTTTGTGTTTTGCGTTCAGTTCTGTGCCCCCCACCCATTCAATTTGTTCTCTGTTCC ACCTCTTCCATTTGAGATTTGAGTTGTTGTAAGTCCTAATCCTAGCATGATTTGCATAAAATGCAAGGAATGTTTACCGT GAAACCAATCATACTGCCAGCTGCCTATTGTGTGCTCAAGTTGGTGTTGAATTCATGATTTCATGATTGCACCTTTCTTG GGGCTGCTTGCTCTCTTATAGACCCTCTGCCCTGTGTCTGGTCTGTTGAATTGCAGTCCCATTGTCTGGTCTGTTTGTTA GACCTCCTCAAATGACAATAGTTTCAAGTTTGACACTAATGTTTCTATATGAGGAGTGCTGTTAACACTCATTTTCACAC TCATGGGAACTTTTATTGGTTGAAATTCATTTAGGTTTAACTTAGTGTTATTGCCCTGTTGGAATCTCATGGCAGGATTT TGGCTATCCGCCATGGCTGGTATCCTACCATAATCCATCATCATTATTCATCAAATATGGTGGGTTTTGGTTTCTCGGTC ATAGTTAGCCATCCGTCATTATAAAAATTATCATCTAAATTATGACTGGTTATTTCTCAGTGTATACCAACAGAAATAGT GAGAGGTCTGATTAACAAACATCAAAGACAATTATGATTAGAGAATGCCTACTACGGAGATGGTTGGAAGATCCGCTAGT AGTTGTGGACTTGTGGTTTCCGGATATCAATGGTGTCCTTAAGCACATTGTCCTTTATACAAATCAGTCAGAAATTTTGG ATGATATTCAATTACTTCTGCAAAATAATTATGCAATTTTTGTTGGTATTAGAGGAATCATTAGAAATTTAGAATACTCA AAGCATAGTTTTCTCCCCTGTTTGTGAGAGCCAACAAAATGTTTTTTTTTGGAACTTAGAGCCAACAAAATGTTGATTCC ACGAAAAATGACGTTGAAAGAGTAGAAAAAATAATAACGACACCAATATTTGTAATTGCAAGGAAGGGATTAATTGGACT ATGCCTACACTTTGACTTACATATTTGACTTATTAGATAGAGTGAGTGACAAACTTATTGTTAACAGTTGAATATGAATC GATAAATAATATGGGTGTAGCACTATAATCAATGATCAAGATGTCGGGATCATGTCACATTTGAAGAAGGGATTTTGAAA CTCATCAATGGATTGTTCAATAGCTGGTTCATATTTTAAAATGCTAGCTTGTGAAATGCGGACATACTTGCTAGTTCTAA ATCAAATTTAATCGACAAAAATTCACCAAGAATATGAAGTTTGCTTATCATATGGCCCAAATTCTTCTAGTGTAATTTCA TGTTTCTTCTGCATTTTCTATGCTGCTGACAGTCGCTTCTTGGTGTCCACCCCAACTCTTTATCCTATCTTCAGCAAGGG AAGCCTGTGATTATGTCAACATTGAGTCATCACACTGCTCAAAACTCAAAAGCAACATTGAATTGAACTTGTCTATGTAG TTAAAGGATGTTGAATAATATCTTACCTCTTTGTTCCAGTTAGTTTTGTAAACCATCACGAAAAGAACAAATGTCTGCAG TATTGTCCCGGCCATCATTCCACACCAGATTCCCTGAAATTTAAAAATAGTGGAGGTCCTCTTCATTAAAAAAATATTAT AAAATATCATAATAATCCTTGAAAAACAAAAATATATATCGACATGTGCTTCCTCATTAATTCTAAATCAAATGTAACGA AGGACAATGACTTACCTTGACTCCCAAGTTAACCTTGTAACCCAATACAAGACCCACTGGAATTCCAAAAAGATAGTAGC ATGCAATGTTCACATAGGCAACAACAGCCTGCCATCCTGCCCCAATAGCTACCCCTGCTCAAAAAATAAAATACCATACA TGCATTATTGCATTAACAAGACAATTAGTTGTATTAGAATAAACATTTGGAAGGTGAAATTTGTATGAATAAACATTTGC GTTTGTCCATATATGGATTGATTTACCATTCATAGCCACTTATTTGACTATATCTCTAGTCAAGATAACTAAACAAACTG AAATTAAAGAATTTGTGTTGAGAAGAGAATGAATCTATGTCTATTACCTGAAAGAACAGGTTGAACATTATTAATGACAA CACAAAAGGCCAACAAAGGTGTGAGATCCTTGACTAGGTCTTTTACTTCTGTGTCATTTGAAAACAGAGAAGGATAGGCG TCACGCAATATGATCAAAACAAGAGCGAGTAAGAGTCCGATCAAAATCGAAGTAACCACTGCAACCACCAGAGAAAATCT TGCTGTTCTTGGGTGAAATGCCCCTAGTTCATTCGACACTCTCACACTGTCAAATTTCATTGAACATTTGGAAAAATTAA CCACCTATTTCTTATTGATTACATTATAATTTTTCGTTTATGTGATATCATAATCTTAATAGATATGTTTAAATTTGAAT TAAGTACTTTGTGCTGTGAAGAAGCAAACCTTACAGCCACGTTCATCCCGAAGGACACCATGATGGTCCAGCCCAATATA TTCATGCTGCAGATTACAAAATAAAAATACAGTCAGGCTCTTTGGGTGCATTTGTGTAATTGTGCAAATAACTTAATTAA GTGTTTATTAATATGAACGCTTATTTATAATATTATTCGACAAATATGTAGAAATTATAAGCTCAAAACTTTTTGTGTAA TTTTATTTATATTATAAGATAAGTTCAAAATAAATGAGTGTATAAATAGTAAAAACAGGTGTGCAAAAAGTGTTCCACTT CCTCCTAGACTACTTAATTAATGAGCATTTGAAAAATATTAAGGGAACTTGTTGGTAAATTAAGGTTGAAATAGAGTAAC ATACAAAAAAATTATCCTAAAAGTAAATTTAATATAGATTTATGTGATATCCTAAAAGTAAATTTAGTGTAAAAATTTCG ATGTAGTATGAAGTTATATATATTTTTCAACTCAATTTCAGTCAAATTAAGACAATAATAAAATAAAAAATGTTTTGTTG ACACTAATGTTACCTTCATCTTCATCTTTAGAGAGAGTTTAAGGAGGAAAATGAGATAAATGAAAATATAACGAGTGGTG TAATGAGAAGAGAAGAAAGCAGTAAAATAAGATAAGATGAGTGTGAATATATATATAAAAGTTGTACTAAAGCAAATTAT TATTAAAAAAAAACTATAAATAAACAACTGATTTTACACACCCAATTTTTGGTTCTATAAGTAGGGTGACATTGACACCC CTCAATATTAATAAATACTAGCGACAAACATGTGGAATAGTTTAATGTTATTGGCTGAATAAATAAATCATTTCTATTAA AGTTGCACTAAAATACATATAGTTACTGAGACTTTTGACACTTGAATAAATAAATCATTTCTATTAATTTATACTAATCG TTAGAACTTAGAACTTAATTAGAAGCATTATATCACACATTCACACTATCTTCGTTTTTACATACCAGATAGAGAAGGCA TCTACCGACACTTCTGCATTCTTGAGATATCCAGCAAACAAAATCAGCACCATAAAGTACCATGTTTCCAAGCTGCTCAC ATACAAGATAAACATTACATGAGACAAAATATAAATTTATGATTAATTTGTTAACTTAGGTTAATACTATTTTATTAAAC TTATAATAAAATTGCACATGATTTCGATCCGGATCATGCGACTTACCAGAGCATCACAGCTGAAGCAAGAGAGAGGCGGA AAAATCCCCACAGATTCTGAAACGCTCCCCAAGAAAACCCACTCCACGCTGGCCCACACCTCCCACTAAAAATGTACACC AACTGCGCCACCACAATGAACCACCACGTCCCGTTCAGCACCACCGCCGCACCCACCAACCCCCACTGGAGCTTCACCAT CAGCAGCCAGCAGAACACCGGGTGCAGTACCATGGCTATACCCGATATTACAGCAATCACAATCACCTTGCTCTGAGCCT GCAGAAACTTCGCCGTCGGGAAATTGATCGCGTAAGCAAACAACTGCGGGATCATCCAGATGGCGAATGTTCCTGCAGCC TCAGAAATCTCCGCGGTTTGCCCTATCGATTTTAGTATAGGGCCCGCGAAGATGTATAACAAGCACAGAGGGAAAGCCAT GCCCATGAGTATCACCCATGATCTTTGCATGTATACACCAAGCATGTCAATCTTCCCTGCTCCCACCGCTTGTCCACAAA GCGTTTCAAGCGCGCTTCCCATTCCCAACTGCTCAAAATATCATAAACTCAAATCATTTGAAATTCATAACTCATGATGG AGGATTTTCAGTTAGATATTAGTTACCATGATGCCGAAGGAGAAGCCGGCGACGATGGAGTTTTCGACGGAGACGGCGGC GAGTTCGATGGTGCCGAGGTGGCCAGCGAAGATTTGAGTGAAGGCGCCAAGGGAGTACTTGGAGACGAAGGAGAAGATGG CGGGGAGGGCGAGGTAGAAGAGCTTCTTGGATTCGGTGATGAACTGCGTGGAGAATTCTCCAGGGCTGGTGATGAGAGGG ATGTCAGGGGTCTTGGTGGTGAAAATTGCTCCGGTGGCGGTGGTGGTGGGAAGGAGGATTTGATTTTGATCATTGGATTC ATGTTGTATTGGTATGGTTGTCAGAAGTGGCTGCGTGGAGTTGATGTTGAAGTCCTCCATGAATATGGTCCGGGGAGAGT ACTACTATGGCACAGCTAGATTCACTTCATAATGATATATACATACCTCATTTTTGAAACACTTTATTTCCACCTCTTTT TATTTTTATTTCTCTCCTTTTATCATCTATCACATTTAATATTTTATCTCTCTTACTTTTTATTTTCTTCATATCTCTCT CTTCATTCCACCTCTCTCTACATCAAAGAGAGTTGTGAAGATAACATTATTGGATATGATAAGATAATCATCAAATTAAG AAATTTGGTAGCTATTAATGCCAATAACGTGACGAGGTAGGTATTGGTTGGGGCCTATTGATTTGTACTCTGGACTGCAT ACAGCCAGACACAAAAAGGCAAGAAAAAATGAGTGAGGGATTTATTTATCACGCAATTGTCTTCTTTTTGTTTAAAACGG CATGTTTGGTTTGTCAATTTCTGAATTTCTAGTTCTCATTCTCACGTAGGGTGTGGGATTGAATTATAGTGTAAAAAAAT AGTTTTCTTTAAAATCAAGGTTATTAGTAATATTGTTTCGAAATACATTCTTTTTTGAGACATAAGACAAAACACATTCA TTTTAATACAATGTTTAAATTAAATTTATGTGAGTTTCATTAAATTTAAAATATGACATTTCAAAAAAAAAAAGACTTAT TGGAGTGAGACTCATTTAAATTAACAAGTCTTACATAATATTTTTATAAGCAAGTCTTATATAATTTAAATTAATTATAC TAATGAGTTAAAAATCAGAATGGGTAAAAAAGAAAATATAAATCATTTTTCTTGAGAAAGTTGGGTATTCAACTCTCGAT ATTGATGTGTGGGTTGTATTAAAGAATGATTTATAAGTATTTATATAAAGGACTTATAATTGTTGATAAATGTCCTGATC CGTAATTGTGATTAGAACGAACTGATCCAAACTTCTTTTCATAAAAAATAGATACGGAGTTCTTGTAAGTCATAAATGTT GTGCCAATGAGAAAAAATAAGTCAATTAAGGCCTACCATTGAAATAATCATGGACACTTTAAAAAAATAGACAAAAAATG GAGTTTTGTTATGTCCTACTTGGTGAGCCAACCTCGAGGGTGGAATTGGTTCGCTAATATTTATTGAATTTACAATGTGC TTTACCAATGGATGGTTGATTAATATGATATATATATGTATGATCCTTTTTAATTAATTAAAATTTTGTGTATGATTTTT ATGAATGAAAAAGACTTATCGCCGGAGGATTGATTTCATTGTGATATGGATGTTCTCAAATCAAACAAGGTTATCTATAA TGAAAGATACATGCGGTGTACAAGAAATTTTCCATGTTTTATTATCTTGTTTGATACTTTTACTTTATTGTTTTTGTAAT AGCACTGGTGACTGGTTTATTGGTGAAATTAGCATTTAAATTTCCTAGTTATACCTGGATTGAGGATACTCCTAGTCTCC TACTGTCCTACTCGTTTAATTGAAGAAGATCTTTTGGACATAATTAATTCTAAATAGTATATATTTTTTTTAATAAAGAT GCTCATATTATTAAGCAGAAATAGAGCTACATCATTAGCAAGAATACTCTCCAAACCCGGAGGTACTCTTCAAGCCAAAC ATGACAAAAAAAAGAAAGAGCAACTTAGCAAAAAAAAAAAAAAAAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0324700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGACCCGTTTCAAGAAGAACAGGAAGAAGCGCGGCCACGTGAGCGCCGGTCACGGCCGTATCGGAAAGCACAGGAA GCATCCTGGAGGTCGCGGTAACGCCGGTGGCATGCACCACCACCGCATCTTGTTCGACAAGTACCATCCTGGTTACTTCG GGAAAGTGGGTATGCGTTACTTCCACAAGCTCCGCAACCAGTTTCACTGCCCCATTGTCAACATCGAGAAGCTCTGGTCT CTTCTCCCTCAGGATGTGAAGGACAAGGCCTCCAAGGACGCTGCACCTGTGGTTGATGTTACCCAGTATGGATACTTTAA GGTGCTTGGCAAGGGTGTGTTGCCTTCCAACCAGCCCCTTGTTGTTAAGGCCAAGCTTGTCTCCAAGATCGCTGAGAAGA AGATCAAGGAAGCTGGTGGTGCTGTTGTTCTTACAGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0324700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNQFHCPIVNIEKLWS LLPQDVKDKASKDAAPVVDVTQYGYFKVLGKGVLPSNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 35 35 - –
PANTHER
PTHR11721:SF10
1 146 146 2.5E-95 –
PANTHER
PTHR11721
1 146 146 2.5E-95 –
Hamap
MF_01341
1 145 145 12.026
IPR030878
SUPERFAMILY
SSF52080
6 145 140 1.96E-38
IPR036227
Pfam
PF00828
28 143 116 2.1E-22
IPR021131
Gene3D
G3DSA:3.100.10.10
58 146 89 1.5E-38 –
ProSitePatterns
PS00475
107 139 33 -
IPR001196

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015934
Cellular component Large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0324700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…