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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036710
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 4 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.943s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0665900.1
n.a. DNA-directed RNA polymerase II; TAIR: AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|Q9M1J2|RPE5A_ARATH DNA-directed RNA polymerase V subunit 5A; TrEMBL-Plants: tr|V7CXU1|V7CXU1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0665900 LjG1.1_chr1 122792984 122796119 -
3 domain predictions
4 GO terms
LotjaGi2g1v0219500.1
n.a. DNA-directed RNA polymerase II; TAIR: AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|O81098|RPB5A_ARATH DNA-directed RNA polymerases II and IV subunit 5A; TrEMBL-Plants: tr|I3SCP2|I3SCP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219500 LjG1.1_chr2 67465296 67468785 +
3 domain predictions
4 GO terms
LotjaGi3g1v0112400.1
n.a. DNA-directed RNA polymerase II, putative; TAIR: AT3G54490.1 RNA polymerase II fifth largest subunit, E; Swiss-Prot: sp|Q9M1H8|RPE5C_ARATH DNA-directed RNA polymerase V subunit 5C; TrEMBL-Plants: tr|Q2HW77|Q2HW77_MEDTR RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal; Found in the gene: LotjaGi3g1v0112400 LjG1.1_chr3 13854031 13857282 +
3 domain predictions
4 GO terms
LotjaGi4g1v0457100.1
n.a. DNA-directed RNA polymerase II; TAIR: AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|O81098|RPB5A_ARATH DNA-directed RNA polymerases II and IV subunit 5A; TrEMBL-Plants: tr|C6SVA4|C6SVA4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0457100 LjG1.1_chr4 82857961 82862303 +
3 domain predictions
4 GO terms