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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0457100 |
Transcript ID | LotjaGi4g1v0457100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA-directed RNA polymerase II; TAIR: AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|O81098|RPB5A_ARATH DNA-directed RNA polymerases II and IV subunit 5A; TrEMBL-Plants: tr|C6SVA4|C6SVA4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0457100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82857961..82862303) extracted from Lotus japonicus Gifu genome v1.2.
AATTCATTCACTTCGCGTTCGCGTTCGCGCTCTCTCTACCCTTTTGGAGCCATGGCACAGGCTGAGGGTCCATTGCTTTC GGTTTCAGCCATTATCGACCGCCAGTCCGCCGCGCTATCAGCGCTCGCCGGCGTTGTCGCTGCGTTCTCCTGCGAGGCGT TGAAGGCTGATGTAACCGCCTTCAATTTGATGGATTCCGGCGACGGACACACCTTCAAGGATCAAGTTAGAGTCGCTGGT GACATGAGGGTTATGCTTAACGGCTCCAAGTTTGTGAGGAACGATAACGATGGCAAGGATAAGAATCCATCTGTTACGAT GGTTCCCAATGTCCATGGGGCTGTGAGGGAGCAGGTGAAACTGCTGCATTCTAAGATGAAACTATGTTTTGAGTGTTTCA TTGGATAGTGTCATAGTGTATCTATTCTATGATCCGATGCATTTGGACATTGCTATGAGGGTTAAAAGCACCATGGTTGT CAATCAGTTTGGAATAGTTACATTATTAGCACTGGCATGTTGACATTTTGTGATTGGATAATCAAAAGTCTGCACACATT AACAATTTCAAACGAATAGTTAACTTGCATCTTAACAGGCAGAGGCTGATCAAACAAACATCCGCGATGTTGTTTTATTA CATAGTGGACATCTAATAATAGAATAATGAATAAGATATTTTGTATGACCTGAATTGCTCTGGGTTGGCCTGTAATAAGA GTTTGGTGTATTCTTAGAAAAAAAGGAAACACATAGGCAATATTACTTTTAATCAATATATAATCCGATTCTTACATCTT CGTCATCTTGTAATGTAAAACTGTTATTCATATATTTACTTCTAGTTGTATGGAATTTAATGGTGTTGTCCGTAGATGAT GGGATTATTTTATGTTAATTCATTCCTGTCACTGGATGGAATGTATTTGCTGCTAGTCTTACCTCGAGTATCTCTGTAAA TATCAGGGTACTCGTGATTTTGCTAAAGAACAAATGACAATTAGAAAGGAAGCATTTTCTAAAATAGAAAAAGTTTATGA GAGGCATGGTGCCACAGCCTGGATACTCCTGTTTTTGAATTGCAAGATACCCTCAAAGGAAAATATGGAGAAGACTCGAA GTTGATTTATGATCTTGCTGACCAGGTACATATGTTTTTTGCTTTTTCATTTCTTGACTAGTTGTGTTGATGTAATGATA AAACTTTTTTCTATTATCTGGGTAAGGAAATAAAATTCAACTTACAACATTCAAAATTCTGAAGAAATGAATATTTTCTC TCTTGAATTTTTCCCGTGGATATTTGTGATCATTTTCCTGAATTCCGACATTTTTTAAGACATACTACTACTGTTAAGGT TCTCAGCCAGATCCCCCCCCCCCCCCCCCCCCCCAAAGTTCAAAACCCATATAGTTGAATTTTATTTCATGCTAACTTGT TAACTTATTTGATAGGGCGGAGAACTCTGTTCTTTGAGGTATGACTTGACGGTTCCACTAGCTAGGTATGTGACTATGAA TGGTCTGACATCTTTCAAAAGGTACCAAATAGGTAAGGTTTATAGAAGGGACAATCCATCTAAGGGAAGATACCGTGAAT TTTATCAATTTGACTTTGATATTGTTGGTTCATCTGAAAAAATGGATTCAGACTTTGAGGTCATTAAAACGTTGACTGAG CTGCTTGATGAGCTGGACATTGGGGATTATGAGGTAAAATTTATAACATTAATTCTTTGAAGGTATTAGTTTTCTGAAAT TGTAGAACTGTATTGTGATTTGATAATTTGATATTGGCATCAATGGTAATTTTTCATGTTCTGTAAGTAGTTACTTCTGT AAGTGGTTATCAACGTAACACATTATCCATACTTACTCCACATGATACCGTCTATATCTATTAGTAGACTGGGCTTATCT ATTTGGACCAGGATTAGTACATATGTTGGACTTAAAGGTTTCATTGAACGGCATCATTGTCAGCAGCAGGTATTTGTAGT GTGTTGTTATTTGACCACGTGTTAACTGACAGGGTGGTGTTTGCAATGCTCTAACTATATTTGAATGATGAATCAACCCC AATCTTGTTTGCATTGCAATTTGCAGTACAGGAGGCTGCTCAATAATTCATTTATCACCAACCTTGTCTGGTTTGTGAAG GATGACACTCAATATTGATGAGAAAATCTCAAGCCTTTACAGAATCAGAAAGACCGTGTTCCAAATGCTCAGGGACAGGG GTTACCTCGTTGATGACTTGGAAATCAACATGTCCAAACTCGACTTCAAGAACAAGTTTGGTGGTCAACACATGAAGAGC GAAGACCTTGTTATAAAAAAACCCAAGAAGGATAGTTCTTCTGATCAGGTACCTCTCTCAAATCCATATATATATAGTAC AAATGATGGAACATTGTAAATGAGTCCTACTTATATACCAACTTGTTCGTTTGTTATGTGAATGAATGCATGAGTGTGCC TGAGCCTGACTCTTATTCCACGCAGATTTATGCTTTTTTCGTTGATGAACCTAAGGTTGGCGTCAAGATCATAAAGAATT ACATCGATAAAATGCATGAAGATGGTGTTTTCAAGGTTATTTTGGTTGTTCAGCAGAAATTGTCACACTATGCCATCAAA GCCATCAGTGATCTCTCTTCAAAATTTCAATTGGAGGTTTTTGAGGTGATTTCTTTCATTCCTCTGTTATTATCTTCTTG GGAGGGAGGGACCAACTAATTTTCTCATGCAATATTTGCTCGGACTCGTTCTCTTCGACATAACTTTAGCTTATTTTTCT GTCTTGTTTTCTTTCAATTTTGTTGGTTCTTTCATGGATTCTGAATTGCATTGGTGTTCTTAGTGGTTCAATGCCTCTTG CTAAAGATAGAGCTTGCACGTATGAGTTTGAACTTTGAACTATTTGCAGTCAATGAAATACATGATGCAATAATGAGTAC AATTCTGCTTTGTGTGATTTAGTTTTCTAGACTTAGATGCAAGTGCAGTTCATGATTGAGGGAGCCACTTCAAATTATCC ACATTCTTTATTCTAATCTTTATGTTGTAAAGCTTTCATCAAGAGAAACATGTGAGGAAATTATGCTATTAAGATTATTT TCGTTCGATTTTACTTTTCAATGGTTAAGATTCCCACCTACCCGGTTTCCATTTGTATTTAGTTGGTTACATTACACTCG CAACAACTCCTGTTAGACATGTATTTACAGTTTTTAAGAACAACCTTTGATACAGGAAGCAGAATTGCTGGTCAACATAA AAGAGCATAAACTTGTACCTGAACATAAAGTGCTGACCGATGCAGAAAAGAAAACTTTGCTTGAGAAATATACTGTGAAA GAAAATCAGGTCAGCATGTTAAATTTTGAATTTTATGTTACCCTATGCTGTTTGTAACTTGGAATGCATCATATCAATTT TAAACTAGCTTATTGGAGTGAAATGTACCCTGACATGTTGTTCTTATTTCGCGTGTTTTTGGATGCGAGTTGAGTGCAAT GTGTAAGTCCTTTCATCCTAATCCAAATGAAAAGTTCTGTAGTTCCGTTCACTTTTGTCTTGAAATAAGTGTTGGCGGTT CGTTTGCACTGATCCAAACATAGCTGATAAGCTGAATGATTTGTATCTTGTATGCTTATTTCAAATTTAGTGAAGTTGTA CTAATTTATGTAGATACTGACATGGTACTTTATGGGATGTGTCTCAGCTACCTAGAATGCAGGTGACTGATCCTGTTGCA AAATATTATGGACTTAAGCGTGGACAAATCGTGAAGATAACTCGGCGACTGCAGGCAAATATGTCACCTACCGATCTGTT AATTGACAACTTCCTTGAATATACTGACTTTACTATGCTATTTCATTCTGTTATCCAGGAGTAAGGCAAAGCCTTTTTGA ATAGGGTGACCTCTTTCTGTTTATACTTTATAATAGATAAATATTTGTGTTACTTTTGGAGCTTTGGAATCTAAAGTGAG CATGATCTTATCATATAAAAATGTGTTGAAAGGCATTTTCTCTAGTTTGATCTAATCATATGATAGTCTGATCTTATCTC TCACAATGGCTAAACTCATTTCCAGTTCCCGATTTGAATCACCATTTTCTGGTATTTGTTTTAGTTTTTTTAATGGTAAG ATATCGTTTGAAAGTTTCGTTAACAAAAAGTGTCAGGATGTTTGTTTTTTGTTTTCATATTTCCTAACAGATATCTAAAC AAGCTCTTAGCTGTTTTAAAATTTGAGTTTTTATTATAATAACTAAACATGTTATTCCCTACTATATTTCTCTTCTAATC ACTTTCTTTCTCTAATCTGTTTT
CDS sequence (LotjaGi4g1v0457100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACTCAATATTGATGAGAAAATCTCAAGCCTTTACAGAATCAGAAAGACCGTGTTCCAAATGCTCAGGGACAGGGG TTACCTCGTTGATGACTTGGAAATCAACATGTCCAAACTCGACTTCAAGAACAAGTTTGGTGGTCAACACATGAAGAGCG AAGACCTTGTTATAAAAAAACCCAAGAAGGATAGTTCTTCTGATCAGATTTATGCTTTTTTCGTTGATGAACCTAAGGTT GGCGTCAAGATCATAAAGAATTACATCGATAAAATGCATGAAGATGGTGTTTTCAAGGTTATTTTGGTTGTTCAGCAGAA ATTGTCACACTATGCCATCAAAGCCATCAGTGATCTCTCTTCAAAATTTCAATTGGAGGTTTTTGAGGAAGCAGAATTGC TGGTCAACATAAAAGAGCATAAACTTGTACCTGAACATAAAGTGCTGACCGATGCAGAAAAGAAAACTTTGCTTGAGAAA TATACTGTGAAAGAAAATCAGCTACCTAGAATGCAGGTGACTGATCCTGTTGCAAAATATTATGGACTTAAGCGTGGACA AATCGTGAAGATAACTCGGCGACTGCAGGCAAATATGTCACCTACCGATCTGTTAATTGACAACTTCCTTGAATATACTG ACTTTACTATGCTATTTCATTCTGTTATCCAGGAGTAA
Protein sequence (LotjaGi4g1v0457100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLNIDEKISSLYRIRKTVFQMLRDRGYLVDDLEINMSKLDFKNKFGGQHMKSEDLVIKKPKKDSSSDQIYAFFVDEPKV GVKIIKNYIDKMHEDGVFKVILVVQQKLSHYAIKAISDLSSKFQLEVFEEAELLVNIKEHKLVPEHKVLTDAEKKTLLEK YTVKENQLPRMQVTDPVAKYYGLKRGQIVKITRRLQANMSPTDLLIDNFLEYTDFTMLFHSVIQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 1 | 200 | 200 | 5.4E-72 | ||
Gene3D | 3 | 135 | 133 | 2.8E-41 | ||
PANTHER | 6 | 194 | 189 | 1.6E-80 | – | |
SUPERFAMILY | 6 | 136 | 131 | 1.7E-35 | ||
PANTHER | 6 | 194 | 189 | 1.6E-80 | ||
Pfam | 7 | 92 | 86 | 2.5E-26 | ||
SUPERFAMILY | 133 | 195 | 63 | 6.41E-23 | ||
Pfam | 135 | 195 | 61 | 3.7E-26 | ||
Gene3D | 136 | 201 | 66 | 4.8E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0457100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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