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LotjaGi2g1v0219500.1

Overview

Field Value
Gene ID LotjaGi2g1v0219500
Transcript ID LotjaGi2g1v0219500.1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase II; TAIR: AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|O81098|RPB5A_ARATH DNA-directed RNA polymerases II and IV subunit 5A; TrEMBL-Plants: tr|I3SCP2|I3SCP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:67465296..67468785) extracted from Lotus japonicus Gifu genome v1.2.

CTACCACCTAAAAACAAGCCGCAAACCACCCATTGAACTAACTTTTGTGTTCCGGGATACAAATTCCGGAAGCTTCCAGG TTCTAATTCTCGAAACTTAAATTTAACCTTTAATTTCTTTGTGTTCCCGAAAGTGGAGGATATTATGAGATTTCATGGGT TGGTTTTGAATTTAACACCCTTTTATCATTGGGCTTTACCCATGGGTTTGTTGGCCCAAACTTGATAGTTCTTACTTCTT AACCTAAGTTGTTTTCTCCAACACTACTAGTTTCTTTCTTCTCTGCAAGTTACATCAGAAGAAGAAGATGGCGTTGACGG AGGAGGACATAACGAAACTCCACCGTATCCGCAAGACGGTGATGCAGATGCTCCGCGACCGCAACTACCTCGTCGGCGAC TTCGAGATCAACATGTCCCGTCACGAGTTCAAAACCAAGTACGGCGACAACATGAAGCGCGAAGATCTCACCATCAACAA AACCAAGAAAGACGGTCCCTCCGACCAGATCTACGTCTTCTTCCCCGACGAACCCAAAGTCGGCGTCAAGACAATGAAAA CCTACACCAACCGCATGAACAGCGAGAATGTCTTCAGGGCTATTCTTGTTTGTCAATCGAACCTAACCCCGTTTGCGAAA ACATGTATCTCTGAAATGTCTTCTAAGTTTCAATTGGAAGTGTTTCAGGTACGAATTCATCACCCTTGTTTTGTTTGTTG ATTTGTGATGGTTGTTGTTGTTGATGGTGAATGATGGTGAGTGTTGGTTGCAGGAGGCGGAGCTGTTGGTTAATATCAAG GAGCATGTGCTTGTGCCGGAGCATCAGATTCTTAATGAGACTGAGAAGAAAACTTTGCTTGAGAGATATACAGTCAAGGA AACTCAGGTCTGTAATCTCTTCAATTTAGCGGCGAATAGCGGGCTATAGTGGGCAATAGCGGTGTCGCAATTAGCTAATA ATCCGCTACGCTATAGCCGCTATTTGATAACACTGATTAGGGGAGGAATGAAGTGTAGTCCAGTTTTGTGATGGGGGGTT TTCAGCTTTTTACTGGCACACATTATATGATTAAGGCTCAGTTTGGTTTAGGTTGTAGGTTCTCTAGGTTGAAGGAGTTT TTCAATGGAGATATCTATTTAGTTCCTGTTTAAGGAGAAAGACCTTGAATGTTTATTAGTGCTTATGGAGAATTTAGCTC AGAAGTTGATTGGTGGGTTTTCAGCTTTTACTGACACACATCATATGACTAGGGCTCAGTTTGGATTAGGTTTTAGCTTG AGGGAGCATTTAAGGAAAAAGACCTTGAATGTTTATAAGTGCTTATGGAGAACTTAGCTCAGAAGTTGATTGTTGAGAAG TTTATCAAAATTATAAGAGAAGCTAATATTTAAAAGACTTAAAGACTTGAGTTAATACATGAAAATTTACACTTGCTTTT CCTGTAAGTGATTGTTGAGAAGTTTATCTAAATTGACTTGTGAATTGTGGCTTCCCTCAGTAATACGCACATGCTTCAAG TATAGGGGGAGGGGGGAGAGGGCGAGGTGTTTGGTAAATTTTCATTTTTTTAAATTTTTTATTGTTTAGGTGCTGTCATA GATTCTTACATGTACTTTGATCTTGTTGTAAACTTGTACTAGGAAAATGCAGAGATTAATCTGACTACAGTGTTTGTCCG AGTTTAAGAATGATTGTTCGTAGTTTATGTTTGGGAAACACACCTAGCTAAAATCACAGAAGACCAATAATTGTGTAAAT TGTCAGCTACTTCCAATAGATTTAGTAAAAATACGCTGTTCTAATTCTTTGAAACACTGAATCAAACATAGGCATAGTAA TTATAAACACACTTGTTGGGGGTAAATGTGTCGTGGCAATTAATAGTGCTTATTCTATTGACTTGTATCTGTAGGAGCAA CCAGTAGCAGCTTCTGCGAAGTTCATCTGGATTCTCATCCAAGTTTTGATTTGGTTTAACTAATATATAGGAAAAGTAAA ATGAGTGTTGGTGTTTTTCATGAAAATGAATCTTCTCCCCTGCTTATTTTCTCTGACGAACAATGATCAGATCTGTGATC ATTGCTATTTAGTTGTCCTTCGAGCTTTTGAATCTAGTTGGATTGGAATGGCTTTCTGCTGAAGAAGTAACTGTTACTGT TAGTGTTTAAGTGTTAACTCCTCCGTTCTTTATCTAATAGCTGTAGATACTCTGGATCTAATTTATGCACTTGTCTTGTG TGCATGTTGCCTCATGTTGCAATTCTAGTTTTCTACTACAAAATGCTGCAGATTCTGACATCCCTAATATTTATGACTGC TTCTCAGCTACCTAGAATCCAGATAACGGACCCTGTTGCTAGATATTATGGACTGAAGCGGGGACAGGTCGTCAAGATAA TCCGGCCAAGTGAGACTGCAGGCAGATATATTACATACAGATTTGTTGTATAAGAATTTCCTTGAACTGACTGGCTGTAC AACTTTTTCAATATGTTACCTACTCATTTATAAGAAGCATGGACAAGGGATATTTAGGCTATTTTGTAATGGTTGAGCAT ACGACTTGAAATATGTTATCATGGTTGGTAATGTTAGTCTCTTATGTGAAACTTCATTGCCATAAATTATTCACCAATGA ACTCTTTTGGTAAGTTGGTATTCTTTTCTTTTTGGATTTTGTTTTGTTTAGTGATTAAAAGTCTCGGGAGAGGGATGGGA GGGTCACTTATTTCTTCATTGCTGGGCATTGGGTTGCTTGCTTTACTATACAAATTAGTGGCTTCTTAGTGCTTCCTAGT GGTTAATTTATGTACTTTAGTTAATTTGTTTAGTTGTAAAGAATTCTCCATTTGTAAAGAACCCTCTTCTCATAATTCCT TTATTCTGGATTTCATGTTATTATGAATGTAAACTAGCAGGGAGTAGAACAGTTATATTCACTTGACTTCAATCTTCAAG TACTTGTATAGGAAGTGAAAATGGATACTCTTTTATTTTATGCCCCTTCCTACACTTCATAAGAATGGCTACTTATTTGT ACGGTGTAATATTGACTTGTTCCCTGTGTGGATTTGTATGTTATTTTCCCCTCAGTGTCAGCTTCAGTTCAAAAGAATAG CAACTATAATGCAATATCAGATTTTAGTAGTTTTGATTTTCTCTGGTATCCATGAGAAAGTTAGCATGTCTGGATTAGTT TGGTGCGGAAGGTATGCAACACATTCCATATTAGAATGATGTAAAATAAAAAGCAATATGAAATTGAAATGGTTTTAAAT TATTATTATTTGTTTGGCAAAAGAAAAAGATTATAATGGTTTTCACAGTACTCTAGCCTCCAATTCATCAAATTTGATCT TCAAAAAATCTTTAAGCTCTGTTGTCACTAAATACTTTGGCACTGACTCCTTCCTTTACTGTAACCACAATAGGCACAAT AGTTGACACAACTACCCAATTCAACATTCTGTAAAGAACAAATAAAAAAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0219500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTTGACGGAGGAGGACATAACGAAACTCCACCGTATCCGCAAGACGGTGATGCAGATGCTCCGCGACCGCAACTA CCTCGTCGGCGACTTCGAGATCAACATGTCCCGTCACGAGTTCAAAACCAAGTACGGCGACAACATGAAGCGCGAAGATC TCACCATCAACAAAACCAAGAAAGACGGTCCCTCCGACCAGATCTACGTCTTCTTCCCCGACGAACCCAAAGTCGGCGTC AAGACAATGAAAACCTACACCAACCGCATGAACAGCGAGAATGTCTTCAGGGCTATTCTTGTTTGTCAATCGAACCTAAC CCCGTTTGCGAAAACATGTATCTCTGAAATGTCTTCTAAGTTTCAATTGGAAGTGTTTCAGGAGGCGGAGCTGTTGGTTA ATATCAAGGAGCATGTGCTTGTGCCGGAGCATCAGATTCTTAATGAGACTGAGAAGAAAACTTTGCTTGAGAGATATACA GTCAAGGAAACTCAGCTACCTAGAATCCAGATAACGGACCCTGTTGCTAGATATTATGGACTGAAGCGGGGACAGGTCGT CAAGATAATCCGGCCAAGTGAGACTGCAGGCAGATATATTACATACAGATTTGTTGTATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0219500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALTEEDITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTKKDGPSDQIYVFFPDEPKVGV KTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSKFQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYT VKETQLPRIQITDPVARYYGLKRGQVVKIIRPSETAGRYITYRFVV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10535:SF8
1 206 206 1.1E-102 –
PANTHER
PTHR10535
1 206 206 1.1E-102
IPR039531
PIRSF
PIRSF000747
1 206 206 3.8E-89
IPR014381
Gene3D
G3DSA:3.40.1340.10
3 133 131 7.0E-48
IPR036710
SUPERFAMILY
SSF53036
5 134 130 7.59E-42
IPR036710
Pfam
PF03871
6 90 85 1.2E-33
IPR005571
SUPERFAMILY
SSF55287
131 206 76 9.81E-31
IPR035913
Hamap
MF_00025
133 206 74 22.533
IPR020609
Pfam
PF01191
133 205 73 3.1E-34
IPR000783
Gene3D
G3DSA:3.90.940.20
134 206 73 1.1E-35
IPR035913

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0219500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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