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LotjaGi1g1v0665900.1

Overview

Field Value
Gene ID LotjaGi1g1v0665900
Transcript ID LotjaGi1g1v0665900.1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase II; TAIR: AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|Q9M1J2|RPE5A_ARATH DNA-directed RNA polymerase V subunit 5A; TrEMBL-Plants: tr|V7CXU1|V7CXU1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0665900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:122792984..122796119) extracted from Lotus japonicus Gifu genome v1.2.

AAATTTTAAATATTTCATTCTCTATAAAATACAAAAGTTACATGGTAAAACCATGTTTTTTTATTTATTAAAAAAAATCA ATTTGGTAAAAAACATTAATACAAGAGAAAAGAAACTCCACTATTAATTTACCTGCTTTGGACTTTGAAGCAGGGTTTGA CTTCAGAGTGACCAAAGAGAAACAGAGGAAAAAGAGACAGCAGAACCATGGAAGAGAACGGAGGAGGACAACAACTGGTA GCGGCCGAGAACGGTGGTGGTCACGACGGAGCAAGAGAAGCCACATGTCTAAGCATGAAGATGGACGATGGTAGCAGAGA GAGTCACAGGTACTACCTCTCTCGCAGAACCGCATTGGAAATGCTCAAAGACAGAGGCTACACCATTCCCTCCTCCGAAA TCCAACTCTCCCTCTCTGAATTCCGTGAAACTCACGGCCAGAAGCCCGACGTCGACCGCCTCCGCTTCTCCGCCACCCAC TCCGCCGACCCCTCCAAACGGGTACGGGTACCCTTCTCTTTTTCTGCTCCTGAAATTGAACTGAATTTGAATTTGATTTG ATTGAGTTTCCCTTGCAGGTTCTGGTGATTTTCTGTGGTCCTGGTGTGGTTAAGGTCACTTCCATCAGGAACATTGCTGG ACAGATTGTTAACAAAGATACCTTGTCTGGGGTCTTGTTGATTGTGGAAAATAATATCACTGGTCAGGCCTTGAAAGCTA TCAATCTTTTCTCATTTAAGGTTGAGATTTTTCAGGTTTGTAAACTTGATCTGGAGGTTGTTTTTGTTTTGTTTGATTTG CTGCTGGGGATTTTTTGTTTGCATGTTGTGTTTCTAGGTTCTAAAAGGTTTAGTTGGACCAATATTTTGATTTTGAAGGA TGCCTAGGGTAGGAGAAAACAAGTTCAGAGAGAAAAGTGAAGAAGAATTATCATTTCATCAATTTTAGTGTCAATGTACA TCAGAACAACTCTTTTATACAAATTGTGAGAGTTGTGAGTGTTAAGCATTGCTATATAACTGACAGAAAGGAAAAGGAAA AACTGAAAAACTAAGTACAACTTTCCTATTTTTGGTCAGTAGCAGAGTGGCTTACTTTCTTTCCAGATTTAGTTAGTAAT CAACTAACTAATTTCAACTCTCTGACTCACTATCTCAAGACAGGGTGTACAGTTTGATAAGTAAGAGTTCTGGTGGTGTC TGTGCCTGTAGTTGCATGAAAATACAAGTTGAAATATACAATTTAATTGCTGTTGAATTAAACTAGGCAAATAATAACAT ATTTTTATGTTCAGAACGGTTCATGCTACTTAAGGTATTAATTCTCCATTTGATTTGAAATTTGTTCTTTTACATTAATT TTGTCCATTGTCTTATAGTCGTGTCCTTTGGTATCCATGTCACTGTCATGTGGTATCCCTGAATCTGTGTCATGTGTCGT GTTTGTGCTTCTTGGTAAAGTTATTGTGCCAACTAAGGGTATGTTCGGATGCCCGTTGGTGTGAGTGCTAACGGGTCTTA GCACTCATTTTGAGGCAAAACGTGGACGGAACCCTTATGGATTGAGATGAATGTGCTTTCACATTAATTCGACTGGTAGT CTTACAAGTTTTAAATCCCTCTTGTTCAATCGTCAAGTATGCTTGACCTTCTTTCTATGTGGAAACCGGGAGCTTTGTCA AGGAAGAAAAATTTGGCATGCAATTGTTGGTAAAGAGTAAAGACAGTAGCTTGACTTCTGATCCAACTTTTCTTCAATAG TGATCCATTAATTACTTATGATTCTTACTACATCCCTATTTGGTTTGTAACTTGATCTCTACAACATGAATTGTGATACT CTGTAATTTTTGTTCTCTTCAACATGAAACTTGTTGCTAGTTTTCTTATCTGTGCTGACAACAGTTACCAGTTTCATGCC CAAAACTCATTGAAACATTTTTTCCTTACTGTTCAGATCACAGATTTGCTTGTTAATATTACAAAGCATGTATTGAAGCC AAAGCATCAGGTGCTGACTGATCGGCAAAAGAAAAATCTTCTGAAGAAGTTCAATATAGAAGAAAAACAGGTCAGTTGAT AGAACTTGGGAAAAGCCTATCTCGGGCATGGATAAAGTTTTTTGATTTGCTTATACTCTGATGGTGGGTTACACTATCAC TTGTATGCAAGATACTAAATTTTCTATGGAGCATCTGCAATGAACTCCTGAAGATTGTTTGTTTAAGAATTTGGGTCTTG GGTAAATAACTAAATAAAAGGAATTTCAGTTTGAAGCTACTCAAAGGAAATTATCTCTGTTGGTATCAGCAAGAACAAGT TGTCTAGTTATTTATTTACTATAGGCGTGGTACGTAAATAGCATGATAGGATGATACACACTTAATCTTTATAGTTAACC AGTTGGTTTGGATTCTCTCATTTTGAGTTAAAATATGATGTCTACTTCTGTCTTCCTGCATATTTAATAAGCAGGACCCA ATAAATTATATGAAGAAAGAAGTAGTGAAACTCTGAATATTTATGAACACCATTCACAATTTTTTGATCCGGAAACCTGA CATAATTTCATCATATATTTATGTCACGTGAACAAGTTAGTTTTACACATGAAACATGTTAGTTAGAATTGTGTGCTTTA GACCATTTAAGTTTTGCATTGATTTATCTCTGGTTGGTACTGAATCAGACTTCATAAATCTAATATTTCAGCACTTTATT GTTCCTAATCCAACACTAGTATTCTTATATCATGTTTTGTTGTTATCAGCTTCCCCGTATGCTGCAGTCAGATGCAATCG CTCGATATTATGGACTTCAGAGGGGGCAAGTAGTTAAAGTTACCTTCAGTAGTGGTGAAATCACCCAGCTGCATGTCACA TATCGATGCGTTTGGTGATATTTTCTTGTTCTGTTGTGTTTTATCATGTTCTATCTTGTATTATCATGTTCTGTCTTGTA TTTTGGTGGTTGAACTCGCAGAACTTGGCTGTTGTATTGTATGATATCATGCATAAGAAGTTTATTTATAACTCAGGTGA TAACAACAAAACTTATTGTTACTAATTGCAATTGTAACCTTTTTTTTGTTACTAACCAAACTGTAAACTTGCTGAGTAGC TATATCTCTTTAAAAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0665900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAGAACGGAGGAGGACAACAACTGGTAGCGGCCGAGAACGGTGGTGGTCACGACGGAGCAAGAGAAGCCACATG TCTAAGCATGAAGATGGACGATGGTAGCAGAGAGAGTCACAGGTACTACCTCTCTCGCAGAACCGCATTGGAAATGCTCA AAGACAGAGGCTACACCATTCCCTCCTCCGAAATCCAACTCTCCCTCTCTGAATTCCGTGAAACTCACGGCCAGAAGCCC GACGTCGACCGCCTCCGCTTCTCCGCCACCCACTCCGCCGACCCCTCCAAACGGGTTCTGGTGATTTTCTGTGGTCCTGG TGTGGTTAAGGTCACTTCCATCAGGAACATTGCTGGACAGATTGTTAACAAAGATACCTTGTCTGGGGTCTTGTTGATTG TGGAAAATAATATCACTGGTCAGGCCTTGAAAGCTATCAATCTTTTCTCATTTAAGGTTGAGATTTTTCAGATCACAGAT TTGCTTGTTAATATTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGATCGGCAAAAGAAAAATCTTCTGAA GAAGTTCAATATAGAAGAAAAACAGCTTCCCCGTATGCTGCAGTCAGATGCAATCGCTCGATATTATGGACTTCAGAGGG GGCAAGTAGTTAAAGTTACCTTCAGTAGTGGTGAAATCACCCAGCTGCATGTCACATATCGATGCGTTTGGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0665900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEENGGGQQLVAAENGGGHDGAREATCLSMKMDDGSRESHRYYLSRRTALEMLKDRGYTIPSSEIQLSLSEFRETHGQKP DVDRLRFSATHSADPSKRVLVIFCGPGVVKVTSIRNIAGQIVNKDTLSGVLLIVENNITGQALKAINLFSFKVEIFQITD LLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQSDAIARYYGLQRGQVVKVTFSSGEITQLHVTYRCVW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 - –
PANTHER
PTHR10535
23 237 215 1.5E-108
IPR039531
PANTHER
PTHR10535:SF2
23 237 215 1.5E-108 –
PIRSF
PIRSF000747
31 237 207 2.4E-74
IPR014381
Gene3D
G3DSA:3.40.1340.10
32 163 132 4.9E-29
IPR036710
SUPERFAMILY
SSF53036
36 164 129 5.23E-29
IPR036710
Pfam
PF03871
37 120 84 5.8E-22
IPR005571
SUPERFAMILY
SSF55287
161 237 77 1.57E-22
IPR035913
Pfam
PF01191
163 236 74 2.3E-27
IPR000783
Gene3D
G3DSA:3.90.940.20
164 236 73 1.7E-26
IPR035913

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0665900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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