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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR037363
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.715s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0024900.1
n.a. Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPN0|D7UPN0_LOTJA SEC13 family protein; Found in the gene: LotjaGi1g1v0024900 LjG1.1_chr1 2969565 2972454 +
2 domain predictions
1 GO term
LotjaGi1g1v0024900.2
n.a. Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPN0|D7UPN0_LOTJA SEC13 family protein; Found in the gene: LotjaGi1g1v0024900 LjG1.1_chr1 2970841 2971746 +
2 domain predictions
1 GO term
LotjaGi2g1v0440600.1
n.a. Protein transport protein SEC13; TAIR: AT1G64350.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q93VR9|SEH1_ARATH Protein SEH1; TrEMBL-Plants: tr|D7UPM8|D7UPM8_LOTJA WD40 repeat nucleoporin similar to SEH1; Found in the gene: LotjaGi2g1v0440600 LjG1.1_chr2 93688296 93690318 +
2 domain predictions
1 GO term
LotjaGi6g1v0154500.1
n.a. Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPM9|D7UPM9_LOTJA SEC13 family protein; Found in the gene: LotjaGi6g1v0154500 LjG1.1_chr6 43272183 43275339 +
2 domain predictions
1 GO term
LotjaGi6g1v0154500.2
n.a. Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPM9|D7UPM9_LOTJA SEC13 family protein; Found in the gene: LotjaGi6g1v0154500 LjG1.1_chr6 43272820 43274027 +
2 domain predictions
1 GO term
LotjaGi6g1v0154500.3
n.a. Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPM9|D7UPM9_LOTJA SEC13 family protein; Found in the gene: LotjaGi6g1v0154500 LjG1.1_chr6 43273122 43274027 +
2 domain predictions
1 GO term