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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0024900 |
| Transcript ID | LotjaGi1g1v0024900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPN0|D7UPN0_LOTJA SEC13 family protein; Found in the gene: LotjaGi1g1v0024900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2970841..2971746) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGGTCAAAAGGTTGAAACAGGTCATCAAGACACCGTTCATGATGTTGCAATGGATTACTATGGAAAACGGCTGGC TACAGCCTCGTCTGATCACACCATTAAGATAATTGGGGTGAGCATCGCTGCCTCTCAGCATTTAGCAACTCTCACTGGTC ACCAAGGACCCGTCTGGCAGGTTGCATGGGCTCACCCTAAATTCGGTTCCCTACTTGCTTCCTGTTCCTATGACGGGCGT GTTATTTTGTGGAAGGAGGGCAATCAAAATGAATGGACACAGGCCCATGTCTTTGATGAGCACAAGTCATCAGTGAATTC AGTGGCTTGGGCGCCTCATGAGTTAGGCCTTTGCTTGGCTTGTGGTTCGTCGGATGGGAACATCTCGGTTTTCACTGCAA GGGCTGATGGTGGCTGGGATACTTCCAGGATTGACCAAGCTCACCCTGTTGGTGTCACTTCTGTGTCATGGGCTCCCTCG ACCGCTCCCGGTGCTCTTGTTAGTGGTGGATTGCTTGATCCTGTGCAGAAGCTTTGCTCTGGTGGTTGTGATAATACTGT GAAGGTGTGGAAGCTCAACAATGGGCTCTGGAAGATGGACTGCTTCCCTGCTCTTCAGATGCACACAGATTGGGTTCGAG ATGTTGCTTGGGCACCCAATTTGGGACTTCCTAAGTCTACAATTGCAAGTGCTTCGCAGGATGGTAAGGTGATTATATGG ACTGTGGCCAAGGAAGGAGATCAATGGGAAGGCAGGGTTTTGAATGATTTCAAGACCCCTGTTTGGAGGGCGTCCTGGTC ACTGACTGGAAACATATTGGCTGTGGCTGATGGAAACAACAATGTTACATTGTGGAAGGAAGCAGTTGACGGGGACTGGC AACAGGTGACGACTGTGGAACCGTAG
CDS sequence (LotjaGi1g1v0024900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGGTCAAAAGGTTGAAACAGGTCATCAAGACACCGTTCATGATGTTGCAATGGATTACTATGGAAAACGGCTGGC TACAGCCTCGTCTGATCACACCATTAAGATAATTGGGGTGAGCATCGCTGCCTCTCAGCATTTAGCAACTCTCACTGGTC ACCAAGGACCCGTCTGGCAGGTTGCATGGGCTCACCCTAAATTCGGTTCCCTACTTGCTTCCTGTTCCTATGACGGGCGT GTTATTTTGTGGAAGGAGGGCAATCAAAATGAATGGACACAGGCCCATGTCTTTGATGAGCACAAGTCATCAGTGAATTC AGTGGCTTGGGCGCCTCATGAGTTAGGCCTTTGCTTGGCTTGTGGTTCGTCGGATGGGAACATCTCGGTTTTCACTGCAA GGGCTGATGGTGGCTGGGATACTTCCAGGATTGACCAAGCTCACCCTGTTGGTGTCACTTCTGTGTCATGGGCTCCCTCG ACCGCTCCCGGTGCTCTTGTTAGTGGTGGATTGCTTGATCCTGTGCAGAAGCTTTGCTCTGGTGGTTGTGATAATACTGT GAAGGTGTGGAAGCTCAACAATGGGCTCTGGAAGATGGACTGCTTCCCTGCTCTTCAGATGCACACAGATTGGGTTCGAG ATGTTGCTTGGGCACCCAATTTGGGACTTCCTAAGTCTACAATTGCAAGTGCTTCGCAGGATGGTAAGGTGATTATATGG ACTGTGGCCAAGGAAGGAGATCAATGGGAAGGCAGGGTTTTGAATGATTTCAAGACCCCTGTTTGGAGGGCGTCCTGGTC ACTGACTGGAAACATATTGGCTGTGGCTGATGGAAACAACAATGTTACATTGTGGAAGGAAGCAGTTGACGGGGACTGGC AACAGGTGACGACTGTGGAACCGTAG
Protein sequence (LotjaGi1g1v0024900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSIAASQHLATLTGHQGPVWQVAWAHPKFGSLLASCSYDGR VILWKEGNQNEWTQAHVFDEHKSSVNSVAWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS TAPGALVSGGLLDPVQKLCSGGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW TVAKEGDQWEGRVLNDFKTPVWRASWSLTGNILAVADGNNNVTLWKEAVDGDWQQVTTVEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 301 | 301 | 9.8E-202 | – | |
| PANTHER | 1 | 301 | 301 | 9.8E-202 | ||
| Gene3D | 2 | 301 | 300 | 5.3E-103 | ||
| SMART | 2 | 39 | 38 | 0.045 | ||
| ProSiteProfiles | 7 | 37 | 31 | 8.67 | ||
| ProSiteProfiles | 7 | 295 | 289 | 27.843 | ||
| SUPERFAMILY | 8 | 286 | 279 | 8.7E-49 | ||
| Pfam | 8 | 37 | 30 | 0.002 | ||
| SMART | 44 | 85 | 42 | 1.6E-7 | ||
| Pfam | 46 | 85 | 40 | 4.0E-5 | ||
| ProSiteProfiles | 51 | 85 | 35 | 10.275 | ||
| PRINTS | 72 | 86 | 15 | 2.8E-5 | ||
| SMART | 91 | 132 | 42 | 1.0E-4 | ||
| Pfam | 95 | 131 | 37 | 0.012 | ||
| SMART | 138 | 191 | 54 | 0.015 | ||
| Pfam | 146 | 191 | 46 | 0.027 | ||
| PRINTS | 178 | 192 | 15 | 2.8E-5 | ||
| SMART | 198 | 241 | 44 | 2.5E-4 | ||
| ProSiteProfiles | 205 | 242 | 38 | 10.542 | ||
| Pfam | 206 | 240 | 35 | 0.06 | ||
| PRINTS | 228 | 242 | 15 | 2.8E-5 | ||
| SMART | 247 | 286 | 40 | 0.39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0024900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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