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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0154500 |
Transcript ID | LotjaGi6g1v0154500.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPM9|D7UPM9_LOTJA SEC13 family protein; Found in the gene: LotjaGi6g1v0154500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43272820..43274027) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTGAATATAAAAGTTATTATTTGTGTATCAATCATGCTTTGGTTCATGAATTTTTGTTATTTGAAGCTTGAATAGTT TCTCACTTGGATTTGACATTATATGTTTATGTTGATTGTGTATGTTATGTATTTGATTTTTTCCCTCTTGAATTGTGTTT GATTTAAGATGAGTTTGCTTACACAACATTGATATGTTAATAGTTTAGCTTGGTTTTGTTTAATTTAGCTCAGATTGGTT TCATTTGCAAATGTTTGTTTGAAACTAACTGTTTGGAATGTATTTATGTTTCTAGCAGAAACATGCCTGCTCAGAAGGTT GAAACGGGTCACCAAGATACTGTCCATGATGTTGCAATGGATTACTATGGTAAGAGGCTAGCTACGGCTTCTTCGGACCA CACAATTAAGATAATTGGGGTGAGCAACACAGCTTCTCAGCATCTAGCAACTCTGGCCGGTCACCAAGGACCTGTTTGGC AGGTCGCGTGGGCTCACCCTAAGTTTGGTTCTATGATTGCTTCTTGTTCCTATGATGGCCGCGTCATTATTTGGAAGGAG GGTAATCAGAACGAGTGGATCCAAGCTCATGTGTTTGATGACCACAAATCATCTGTGAATTCAGTTGTTTGGGCACCTCA CGAGTTGGGTCTCTGCCTGGCTTGTGGTTCATCTGATGGGAATATATCTGTGTTCACAGCAAGAGCAGATGGTGGCTGGG ACACCTCAAGGATTGATCAAGCCCACCCAGTTGGTGTTACTTCTGTGTCTTGGGCTCCCTCGATGGCACCTGGTGCTCTT GTTGGTGCAGGGTTGCTTGATCCTGTTCAGAAGCTGTGCTCTGGTGGTTGTGATAACACTGTGAAGGTGTGGAAGCTCAC CAATGGAAACTGGAAGATGGACTGCTTCCCTGCTCTTCATATGCATACAGATTGGGTTCGAGATGTTGCTTGGGCACCCA ACTTGGGACTTCCTAAATCCACTATTGCTAGCGCATCACAGGATGGTAAAGTCATCATATGGACTGTGGGCAAAGAGGGA GATCAGTGGGAAGGCAAGATTTTGAATGATTTCAAGACCCCTGTTTGGAGGGTCTCATGGTCATTGACTGGAAACATACT GGCTGTGGCTGATGGGAACAACAATGTGACATTATGGAAGGAAGCAGTAGATGGGGAATGGCAACAGGTGACAACAGTGG ATCCGTAG
CDS sequence (LotjaGi6g1v0154500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGCTCAGAAGGTTGAAACGGGTCACCAAGATACTGTCCATGATGTTGCAATGGATTACTATGGTAAGAGGCTAGC TACGGCTTCTTCGGACCACACAATTAAGATAATTGGGGTGAGCAACACAGCTTCTCAGCATCTAGCAACTCTGGCCGGTC ACCAAGGACCTGTTTGGCAGGTCGCGTGGGCTCACCCTAAGTTTGGTTCTATGATTGCTTCTTGTTCCTATGATGGCCGC GTCATTATTTGGAAGGAGGGTAATCAGAACGAGTGGATCCAAGCTCATGTGTTTGATGACCACAAATCATCTGTGAATTC AGTTGTTTGGGCACCTCACGAGTTGGGTCTCTGCCTGGCTTGTGGTTCATCTGATGGGAATATATCTGTGTTCACAGCAA GAGCAGATGGTGGCTGGGACACCTCAAGGATTGATCAAGCCCACCCAGTTGGTGTTACTTCTGTGTCTTGGGCTCCCTCG ATGGCACCTGGTGCTCTTGTTGGTGCAGGGTTGCTTGATCCTGTTCAGAAGCTGTGCTCTGGTGGTTGTGATAACACTGT GAAGGTGTGGAAGCTCACCAATGGAAACTGGAAGATGGACTGCTTCCCTGCTCTTCATATGCATACAGATTGGGTTCGAG ATGTTGCTTGGGCACCCAACTTGGGACTTCCTAAATCCACTATTGCTAGCGCATCACAGGATGGTAAAGTCATCATATGG ACTGTGGGCAAAGAGGGAGATCAGTGGGAAGGCAAGATTTTGAATGATTTCAAGACCCCTGTTTGGAGGGTCTCATGGTC ATTGACTGGAAACATACTGGCTGTGGCTGATGGGAACAACAATGTGACATTATGGAAGGAAGCAGTAGATGGGGAATGGC AACAGGTGACAACAGTGGATCCGTAG
Protein sequence (LotjaGi6g1v0154500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLAGHQGPVWQVAWAHPKFGSMIASCSYDGR VIIWKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS MAPGALVGAGLLDPVQKLCSGGCDNTVKVWKLTNGNWKMDCFPALHMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW TVGKEGDQWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 301 | 301 | 4.1E-201 | – | |
Gene3D | 1 | 301 | 301 | 9.4E-103 | ||
PANTHER | 1 | 301 | 301 | 4.1E-201 | ||
SMART | 2 | 39 | 38 | 0.083 | ||
SUPERFAMILY | 7 | 286 | 280 | 7.56E-48 | ||
ProSiteProfiles | 7 | 295 | 289 | 28.502 | ||
ProSiteProfiles | 7 | 48 | 42 | 8.737 | ||
Pfam | 8 | 37 | 30 | 0.0022 | ||
SMART | 44 | 85 | 42 | 3.8E-7 | ||
Pfam | 46 | 85 | 40 | 2.3E-4 | ||
ProSiteProfiles | 51 | 85 | 35 | 10.107 | ||
PRINTS | 72 | 86 | 15 | 3.0E-5 | ||
SMART | 91 | 132 | 42 | 0.002 | ||
Pfam | 96 | 131 | 36 | 0.13 | ||
SMART | 138 | 191 | 54 | 0.024 | ||
Pfam | 146 | 191 | 46 | 0.037 | ||
PRINTS | 178 | 192 | 15 | 3.0E-5 | ||
SMART | 198 | 241 | 44 | 2.5E-4 | ||
ProSiteProfiles | 205 | 242 | 38 | 10.341 | ||
Pfam | 206 | 240 | 35 | 0.06 | ||
PRINTS | 228 | 242 | 15 | 3.0E-5 | ||
SMART | 247 | 286 | 40 | 0.18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0154500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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