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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0183800 |
| Transcript ID | LotjaGi3g1v0183800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3S6C8|I3S6C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25746439..25750044) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGTGCTTCTTTGATGTTTCCTACCCTCAGGTTCCAACTCACTCTTTTTTTTTATTTTTATTTTTAATTTGTGTTTAA TCATTTTCTGTTTTCCTCTAATAGGAGTTATGAAAATCCTCTTAGACTGGTCATTGGGAGGTAAGATTCTCAGTTTGCTT CTTTTTAATTATTATTATTATTATTGGATGGAATAGGACCTTGGTTTGGTGTTATGCATTGGGTTGTAGATGAGGGTATT GGTTCTACTAGAATTGTGTAATGAATAGTTCTACTTTTTTTTTCTGATTAGTCTCTGCATCAAGCACCCAAACTTATTTG GTGGAAGTGAGAAGCTTGATGTTTCATGGGACAAGGGTTTATATGATTCAAATATCTTAGTCGCTTATAGAAGGCCGCGT CCAGAATGGCTTGCTCAGCAGTCTTTTGTATTGCAGGTAGACTGTACTTTCCTATCATTTTATTCTATGCTATGAGAAAT TATGCTAGGCCAGGCTGTACAATAAACTTATGTTCAATGGATTTTTCTTTGTGAAACCTACAAATTTGAGTAAAATTTTA TTGCAGAATCTTATAGTCTCGTCCTTTTTCTTCTTTCAGCATTCTCTTTCACCTGAGATTGCAGTTCATGGTATCCCTAT AAACAATTTCTCCCGATCTGGAAGTGGAGGTGTAAATTTATCTAAATTATCAGTGGGGCTGGACCTGAAGGAACCTATGA GTACAAAATGGAGCAGCACAACCAGCATAAAATTCGAGGTTCAGCTTCACTTTTCATGAAATTGACATAACATCAAAGCA CAGTGTGCATGTGCTTCCTTGTTTTGCATTACCCTCTGATTTGGTTTATAGGCAAAGTGGAAACTGACATTGTAAACAAT CATGCAGCATGTTCGTCCATTGAATGATGATGGTCGTGCTATAAGTAGAGATTATGATGGATTTCCTCTGACTTGCAGGT AGTCAAGAATTCTAGTATTGCAGTTTTCAAAATATTAACCTGATTTTGACCATATGATGTACATTGCTTGTGCAGTGGCA GTACACATGACAGTATGGTAGTGTTAAAGCAAGAATCTCGATTTGCCAAGGCAAATGACCGTAGCTTTTTTCATGTAATA AGATATACTCTTTTTTTCACCTTGCTTTTTACTTCCTATTTATATGGTTGTGAATCAATTAGTTGCATTTTTTTTTATCA CAAATGAACTAGTTGCATATGTATTCCACTGACTGAATGCCTGGTCTTTTCAGTTTAATCTTCAAATAGAACAAGGTATT CCAGTTCTTTCCAAGTGGATACTTTTCAACCGATTTAAATTCGTTGCTTCAAAGGGAGTCAAACTTGGACCAGCATTTCT TTTAACAAGGTTGGTATTTTCTAGCAGTTTAAGAAGATAGAAGTTTTCTGTTTGACTCCGCTATTAGGGAAACAACCATG TGGAGCAGGATTTATATTAAAATTCAGTGCTTGGATTCAGATATATAACACATTGATACAAACTTTACGATTAACCTGAA ATTCAATTCCCCTATTTTCGTTTTTCTCTTGTTTTGTTTGACAAGCAGTTATCTTTGACTATGTCATTTTTTTCACTATC ATCCTTACCTTTTCTTCCAACAGACTTACAGGTGGTTCAATTGTGGGGGACATGGCTCCTTACCAAGCATTTTCCGTTGG AGGGCTTGGGAGTGTGCGAGGCTATGGTGAAGGAGCTGTTGGATCTGGGAGATCATGTTTGGTGGCTAACAGTGAACTGA CGCTCCCTTTGGTATGTATTTCAATAGCTTTACGAACTGCGATCTTATAATGTTAAATTGGACAGATATGTAACATTTTC CCCTTGAATATTCTTATTATGCCAAACGAATCTTTCTTTGTTGAAGAATTTGCTTTCCTTGAAGTTTCTTTTTCTTTTTT GAATATCACTTCCTGCTATGTCTAGTAAGATATTGGTAGGGACGACCTCATGCTCACAATCTTTGGGAAGAACTGATTTT ACAACTATAGTTTGTAATATCAGGCATCTCATGTTTGAAGACCTAATATTAAGTGTAATATCTTCCTTGATAAATGTAGA ATTGTTAGGTTATAATTTATGTTGAAACTTTCACTTTTCTCCTCATTACTGATTTAAAAGAGATCAATTTTTTTTTTCTC ATGAGCCTTTGGAAATGAATCCTATCCAGTGTATCCGAGTCAGTCTATCCTTCCCTCCCACTATGCTTCCACAAGTTACA ACTAGAAATTCCTTGTATATGATTGTAATTCCTGAGATCTTTTATTGCTAAGTATTCCTAGCCTTTACTAAACTACTTGA TGTCTTCTTTACACAGACTAAGATGTTAGAAGGTGCCATTTTCTTGGATTGCGGAACAGACTTGCGGACTGGTCATCTTG TACCTGGTGAGCAATATCATTCTGCTCAGAATCAGATACTCAAATTACTTCCAAATTTTTTAATGTTCTCTTTCTTGATT ATCTTGCTAATATTTATATGATGTATCTACAACTTTTAGCATAAATAAGCGTTACATTTTTTGTCTTCTGAGGAGACTTA GTTAAATTTGTTTGTTCAGTGAGGCAAGTTCTTGAGATAGGGTTCTTTTGCTTCAGATTTTTCTGATTTCATGCTTTACC AAATTGAAATTGATTACCGAAATAAAACTTTCTCTGACTAAAAGTCACTTGTTTCATGTAGTACCTTTTTTTATGAAGTT GATTTATGTAGTACATTCAAAAGTCTATCTATTACCGTCAAGGTGGGTGAAATATTTACAATTATGATAGTGGTATTCGA AGAACAAAATAAAAAAAAAGGTTGATTGGGGTGTGGAGAGTTTTTTGCACTGGGGAATGTTAATTGAAACACTGGAGTCA TCCAAAATTTGACCAGTGAACATGAAGTTCTGAGAACAAATTTTGCTTCTGCTTAATTTTAAATTGAACTTTTCTGTGGT AGGAGACATTCAGTTTAGTTCTTTCATGTATTCTAGTATTGACTTGTTCAAGTCTACATAAAAGCTCCATTTTATTGAGT TAGTGGGAAAAGGGAGCTTAGGTAGGCTAGGCCAACAAGAACTGAGTAAATGATTCTTGTTGAAGAAGTCTCTAGGACCA TTTTGTGTGGTAAAATAAGGGCTATTATTGTAAGGAACATAGAGCTGTGGCCAAAATGTTCCTCGATATTTAGAGTTCCG TCAGAGTTTTATGATGAGTTGGGTACCTTATGCCACAACATCAGCCATTATATTCCAGTGACAAGTTGCTGTGTTTTCAT TGACATATTGTGTTTTTCATAGCTGCTGGTTTGCTTTGCTATGCTATTATCTTAAATTGAACTGCTTGATCATGTTTAGG CTCACTGCACATAATTTTTAAGTCTCTAGCCTAAAACCATATCAATTATCAAATGTGCTCTCATGGTGTTGATCCCTTGA AAATTCAGGAAATCCAGCCTTGAGGCAAGGTAAACCCGGATCTGGTGTTGGATTGGGATATGGACTTCGATTTAAATCAC AGTTTGGTCATTTCCAAGTTGATTATGCCGTTAATGCGTTTCAGCAGAAAACTCTCTATTTTGGCCTCAGCAACCTTGCT TCATGA
CDS sequence (LotjaGi3g1v0183800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTACAAAATGGAGCAGCACAACCAGCATAAAATTCGAGCATGTTCGTCCATTGAATGATGATGGTCGTGCTATAAG TAGAGATTATGATGGATTTCCTCTGACTTGCAGTGGCAGTACACATGACAGTATGGTAGTGTTAAAGCAAGAATCTCGAT TTGCCAAGGCAAATGACCGTAGCTTTTTTCATTTTAATCTTCAAATAGAACAAGGTATTCCAGTTCTTTCCAAGTGGATA CTTTTCAACCGATTTAAATTCGTTGCTTCAAAGGGAGTCAAACTTGGACCAGCATTTCTTTTAACAAGACTTACAGGTGG TTCAATTGTGGGGGACATGGCTCCTTACCAAGCATTTTCCGTTGGAGGGCTTGGGAGTGTGCGAGGCTATGGTGAAGGAG CTGTTGGATCTGGGAGATCATGTTTGGTGGCTAACAGTGAACTGACGCTCCCTTTGACTAAGATGTTAGAAGGTGCCATT TTCTTGGATTGCGGAACAGACTTGCGGACTGGTCATCTTGTACCTGGAAATCCAGCCTTGAGGCAAGGTAAACCCGGATC TGGTGTTGGATTGGGATATGGACTTCGATTTAAATCACAGTTTGGTCATTTCCAAGTTGATTATGCCGTTAATGCGTTTC AGCAGAAAACTCTCTATTTTGGCCTCAGCAACCTTGCTTCATGA
Protein sequence (LotjaGi3g1v0183800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTKWSSTTSIKFEHVRPLNDDGRAISRDYDGFPLTCSGSTHDSMVVLKQESRFAKANDRSFFHFNLQIEQGIPVLSKWI LFNRFKFVASKGVKLGPAFLLTRLTGGSIVGDMAPYQAFSVGGLGSVRGYGEGAVGSGRSCLVANSELTLPLTKMLEGAI FLDCGTDLRTGHLVPGNPALRQGKPGSGVGLGYGLRFKSQFGHFQVDYAVNAFQQKTLYFGLSNLAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 224 | 224 | 1.0E-15 | – | |
| PANTHER | 2 | 226 | 225 | 9.0E-139 | – | |
| PANTHER | 2 | 226 | 225 | 9.0E-139 | ||
| Pfam | 4 | 220 | 217 | 1.8E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Outer membrane | The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites. |
Expression pattern of LotjaGi3g1v0183800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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