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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0178500 |
| Transcript ID | LotjaGi5g1v0178500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|A0A072VWU6|A0A072VWU6_MEDTR Outer membrane OMP85 family protein; Found in the gene: LotjaGi5g1v0178500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:45546483..45549781) extracted from Lotus japonicus Gifu genome v1.2.
ACAACATTTTGAGTGGAACTGCTTCGCCCTTACCAACACCCTTGATTGCCATCAGTAAGCACAATAGCAGTTGCCTCCAT AGGATTTAACCCATATTATTTATTCATAATGATCATGATATATAGATTTCTAACAGGGAATTCCTAGCCTGGTTGTGTTG ATTTATTGTTCCATCTCCTTTCTTATAAGAAAAGAATAAAAGAAAGATTCAAAGTTGCTTCTTTCCTCGTTTAGGCATAG ATGTAAGAGCTAAGAGGAAGCAATAAGGTGACAAACTTCTCATCTATATGTCAAATAAAGAATATCAAAACTAAAAAGCT TGGAATTTTCACCTTTTCCGACTTATACAACACTTTTTTCCGCGTCTCTTCCTCTACCTTCATCACATCCCATTCATTCA TGTTTTATGCAGTTCTTGTATGCAGACAAAGTGTTTGTCATAATGGGAGCTCACAAAAGCATCCATGCTGGCAAAGGTTC ATATCTTCCCTCCATTATAAATAATAAAACTAAACCTTCAATTTATCTAAATAGATGTGATTTTATTTTTTTCCATTAAG ACTTGGTTGACTTCAAATATCATTACCAGTTATTAACTCTCAATTTTGTGCATGGCAGCAAAGCTTGACATTGGAGTTAA TTTCATTCACAATCTCTGTAGTTCTTATGTGCTCTCTCCTCCCAGGTTTCTTACTATTCCTTGCTGATATTTGATAATGT TTTGGTTGAGTTTCTCTCTGATGATGTTTTTCATGAACTCCAACAGGCTATCTAGTAGTAATCCATTTTCTCTGGCTGCT GGCAGGTACAGCATTTTTTTTGTTTGGTTTGGTTTCTAGTGACATCAAATTGGGTTCTTGTACAGAAATGTTGACATGTA AATGAATAATAAAGTACTTACTTATTTCAATTTTGTTCATTGCAGCTTTTGCTTTAAGCATCCTGAGTTATTTAGTAAAA GTGATCTGTTTGATGTATCATGGCACAAGGGGCTGCATGATTCAAATCTCTTGATCTCTTACAGGTACCCTAGACCTCTA TGTCTTGGCCAGAAGTGTCTTATCCTTCAGGTTTGTGTTACATTTTGGCTCAAACTTCTTTGTAAAATTCATATTACAAA GGGTGATAGTATAAGCATGGTAATGAAATTATATTCTCCCTTCACAGCATTCAGCTTCACCTGAGATTAGGATCCATGGA ATTCCCATGAACAATTTCTCCCATTCTACAAGTCGAGGTGTCAGGTTGTCAAAATTATCAATCGGAATGGATATAAATGA GCCGTCAACCTCTAATTGGAGCAGCATAACTGGTGTATATTTTAAGGTTGGTGGAGTTAATGTTGGTTTCATTGATTCCT ACCATGCATATCATTGTGCATATGAATTCAAGCTCCACTACCTTCCTCTAATAATAGAAGTTATTGTTCATCTTTGTTGT GTTGAGATATAATTACTCAGTTCGTTGACACAATCAATTATGCAGCATTTTCATTTTAGAAATGATGGTGGCCGCTCTAT AAGCAGAGATCTAGATGGTTTTCCAGTGACATCCAGGTTGATGAAATTAATTAAGTCCTGAGATAGATAATAACCTGTTT GAATAATTGTTACTAATCATGTTCTTTGAATTTTCTATGTAGTGGAGATTCATTTGACAACATGTTAGTGATTAATCAAG AATCTCGATTTGAAGATGCAAACGATCATGGATTTAGTCACGTAAGTAATCTTACTTGGTAACAAATCACCATTATATAA GTCATATTATGTTTTATTAACTTCAAGTTAGTGTATATTCAGTTCAGTGTACAAATGCAACAAGGGATTCCACTTGGACC AAACTTGCTAACCTTCAACCGGTTTAAGTTTTTTGCTTCAAAAGGAGTCAAACTTGGACCAGCACTTTTCACCTCCTGGT GAGTTTAGTTATACTTTCCATTAAGAAACAAAAGGGTAAGAAATGGATGCAATTGAGTGAACTATATATACTACCACTTT CCCTATCTACTTTAGAAACAGCTAATCCATTTTCCCCCTTTTATTACATGTACTATATCAGTTTTTGAATCTTATCTTGC AGGTTGAGTGGTGGCTCAATTGTAGGACCCATTGCTCCACATCAAGCATTTGCCATCGGCGGTCCGAGTAGTGTGCGAGG CTATGGTGAAGGTGCAGTTGGTTCTGGACAATCATGTTTGGTGTCTAAAAGTGAATTAGCAGTTCCATTGGTATAATGTT CATTACTTTTCAAGTGTTACAGAGAATGTTATACCAATTGTTTGTCCTACTTTCTTTTCATTTTTGTTCTCTTAGCTGTG AAAATTATACATACACTTTTACCAAGATTCTAACTCATTGGTAATTACCTTCCAGATTGCTTAATGTCAAAACTTGTCTC CTGATCACTTTAGCAAGGTTATATCAGTTTCATAATCTAGGGAAAAGCTAGCAAACTTTGATAAAATATCTTTGCCCCAA GTACACAACACAATATCTAATGCTCTAAATGAAATTCCAAGTACTTAGATCTTTATGGCTATTGACCTATGATACTGATA AAAAATCCCCATATGTATATATCCACTATTACTCATTTCATAACCATATTTAATATTGTCATTTCTACTAATCATTGATG CTGATCACTTTTCTTACACTGTTTGCAGAACAAGAAGCTGACAGGTGTTATTTTTTTGGACTGTGGATCTGACTTGAGAA GTAGTCATAAGGTTCCTGGTGAGTTTCATTCCTTAGTAATCAAGTTACAATTAAGTTTATTAGCTAAGACCATTATATAA GTACTTATATCTTAATAAGAAGTGTGTAAATTAATTCTATCTTTTTTTGCCCCTTCACCTGTGATTTGCTCTAACATTTT TAATCATCATATGAGAATTGCAGGAAATCCAGGACTGAGGCAGGGTAAACCAGGATCCGGGTATGGAATCGGATATGGAG TTCGCTTCAAAACTAATTCGTGTCAAATAAACGTTGATTATGCCATCAATGCCTTTCACCAAAGAACTGTCTATTTTGGA ATTAGCAATCTGGTTTTATGAACACTGACTTGGCCTAACTTTGCCAAAATATGCAGGCTCTTCTTCGTTCTTTACAAAAG CATGATGTATAATTGTATATATACTCTCATTATTTGCAAAACATTGTTGTTAATGTGAATTTTGAGAAAATTTCTCGAAC GAAATGTTCAAGAATTTGGTTAAGTCCAAAAACATGCTGAAGAGAATTTAGCCATAGTAGCTAAAAGAGCTCATTTTAAC TAAAAAGTTGAGGTTCTAG
CDS sequence (LotjaGi5g1v0178500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCTCACAAAAGCATCCATGCTGGCAAAGCAAAGCTTGACATTGGAGTTAATTTCATTCACAATCTCTGTAGTTC TTATGTGCTCTCTCCTCCCAGGCTATCTAGTAGTAATCCATTTTCTCTGGCTGCTGGCAGCTTTTGCTTTAAGCATCCTG AGTTATTTAGTAAAAGTGATCTGTTTGATGTATCATGGCACAAGGGGCTGCATGATTCAAATCTCTTGATCTCTTACAGG TACCCTAGACCTCTATGTCTTGGCCAGAAGTGTCTTATCCTTCAGCATTCAGCTTCACCTGAGATTAGGATCCATGGAAT TCCCATGAACAATTTCTCCCATTCTACAAGTCGAGGTGTCAGGTTGTCAAAATTATCAATCGGAATGGATATAAATGAGC CGTCAACCTCTAATTGGAGCAGCATAACTGGTGTATATTTTAAGCATTTTCATTTTAGAAATGATGGTGGCCGCTCTATA AGCAGAGATCTAGATGGTTTTCCAGTGACATCCAGTGGAGATTCATTTGACAACATGTTAGTGATTAATCAAGAATCTCG ATTTGAAGATGCAAACGATCATGGATTTAGTCACTTCAGTGTACAAATGCAACAAGGGATTCCACTTGGACCAAACTTGC TAACCTTCAACCGGTTTAAGTTTTTTGCTTCAAAAGGAGTCAAACTTGGACCAGCACTTTTCACCTCCTGGTTGAGTGGT GGCTCAATTGTAGGACCCATTGCTCCACATCAAGCATTTGCCATCGGCGGTCCGAGTAGTGTGCGAGGCTATGGTGAAGG TGCAGTTGGTTCTGGACAATCATGTTTGGTGTCTAAAAGTGAATTAGCAGTTCCATTGAACAAGAAGCTGACAGGTGTTA TTTTTTTGGACTGTGGATCTGACTTGAGAAGTAGTCATAAGGTTCCTGGAAATCCAGGACTGAGGCAGGGTAAACCAGGA TCCGGGTATGGAATCGGATATGGAGTTCGCTTCAAAACTAATTCGTGTCAAATAAACGTTGATTATGCCATCAATGCCTT TCACCAAAGAACTGTCTATTTTGGAATTAGCAATCTGGTTTTATGA
Protein sequence (LotjaGi5g1v0178500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAHKSIHAGKAKLDIGVNFIHNLCSSYVLSPPRLSSSNPFSLAAGSFCFKHPELFSKSDLFDVSWHKGLHDSNLLISYR YPRPLCLGQKCLILQHSASPEIRIHGIPMNNFSHSTSRGVRLSKLSIGMDINEPSTSNWSSITGVYFKHFHFRNDGGRSI SRDLDGFPVTSSGDSFDNMLVINQESRFEDANDHGFSHFSVQMQQGIPLGPNLLTFNRFKFFASKGVKLGPALFTSWLSG GSIVGPIAPHQAFAIGGPSSVRGYGEGAVGSGQSCLVSKSELAVPLNKKLTGVIFLDCGSDLRSSHKVPGNPGLRQGKPG SGYGIGYGVRFKTNSCQINVDYAINAFHQRTVYFGISNLVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 360 | 350 | 7.9E-193 | – | |
| PANTHER | 11 | 360 | 350 | 7.9E-193 | ||
| Gene3D | 55 | 358 | 304 | 4.7E-14 | – | |
| Pfam | 201 | 352 | 152 | 2.5E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Outer membrane | The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites. |
Expression pattern of LotjaGi5g1v0178500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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