Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:3.20.20.60
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 80 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.038s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0082149.1
n.a. pyruvate kinase [Glycine max] gi|351725077|ref|NP_001236056.1| chr0 32233340 32233770 +
2 domain predictions
1 GO term
Lj0g3v0084829.1
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase [Medicago truncatula] gi|357504415|ref|XP_003622496.1| chr0 33835674 33839200 -
2 domain predictions
1 GO term
Lj0g3v0205369.1
n.a. PREDICTED: 2-keto-3-deoxy-L-rhamnonate aldolase-like isoform X2 [Cicer arietinum] gi|502123824|ref|XP_004498274.1| chr0 102149765 102152280 +
2 domain predictions
1 GO term
Lj0g3v0219409.1
n.a. PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase-like [Glycine max] gi|356522560|ref|XP_003529914.1| chr0 112108793 112109738 -
2 domain predictions
1 GO term
Lj0g3v0268789.1
n.a. PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Glycine max] gi|356559692|ref|XP_003548131.1| chr0 139201713 139208525 -
2 domain predictions
1 GO term
Lj1g3v3329230.1
n.a. Isocitrate lyase and phosphorylmutase [Medicago truncatula] gi|124360683|gb|ABN08672.1| chr1 37589930 37591828 -
2 domain predictions
1 GO term
Lj1g3v3329360.1
n.a. PREDICTED: 2,3-dimethylmalate lyase-like isoform 1 [Glycine max] gi|356569107|ref|XP_003552747.1| chr1 37609896 37612725 -
2 domain predictions
1 GO term
Lj1g3v4693090.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max] gi|356505306|ref|XP_003521432.1| chr1 55776279 55783340 -
2 domain predictions
1 GO term
Lj1g3v4693090.2
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max] gi|356505306|ref|XP_003521432.1| chr1 55776279 55783340 -
2 domain predictions
1 GO term
Lj2g3v0915120.1
n.a. pyruvate kinase [Glycine max] gi|22296818|gb|AAM94348.1| chr2 14479829 14486179 -
2 domain predictions
1 GO term
Lj2g3v0915120.2
n.a. pyruvate kinase [Glycine max] gi|351725077|ref|NP_001236056.1| chr2 14479829 14485196 -
2 domain predictions
1 GO term
Lj2g3v1985200.1
n.a. PREDICTED: pyruvate kinase isozyme G, chloroplastic-like isoform X1 [Cicer arietinum] gi|502160529|ref|XP_004511775.1| chr2 29334795 29340776 -
2 domain predictions
1 GO term
Lj3g3v0931370.1
n.a. PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Glycine max] gi|356576030|ref|XP_003556138.1| chr3 11028354 11033301 -
2 domain predictions
1 GO term
Lj3g3v2901840.1
n.a. PREDICTED: isocitrate lyase 2-like [Glycine max] gi|356542840|ref|XP_003539873.1| chr3 35963403 35966681 +
2 domain predictions
1 GO term
Lj4g3v0668380.1
n.a. Pyruvate kinase [Medicago truncatula] gi|357510595|ref|XP_003625586.1| chr4 11073985 11077340 +
2 domain predictions
1 GO term
Lj4g3v0668400.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cucumis sativus] gi|449463834|ref|XP_004149636.1| chr4 11079766 11082954 +
2 domain predictions
1 GO term
Lj4g3v2375070.1
n.a. PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like [Glycine max] gi|356564561|ref|XP_003550521.1| chr4 32861483 32870082 -
2 domain predictions
1 GO term
Lj4g3v2375070.2
n.a. PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like isoform X6 [Cicer arietinum] gi|502151226|ref|XP_004508337.1| chr4 32861483 32862820 -
2 domain predictions
1 GO term
Lj5g3v0704370.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cicer arietinum] gi|502114247|ref|XP_004494907.1| chr5 10186590 10215731 -
2 domain predictions
1 GO term
Lj5g3v0704370.2
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cicer arietinum] gi|502114247|ref|XP_004494907.1| chr5 10186590 10213264 -
2 domain predictions
1 GO term
Lj5g3v1207980.1
n.a. PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Cicer arietinum] gi|502116389|ref|XP_004495407.1| chr5 19601257 19608923 -
2 domain predictions
1 GO term
Lj5g3v1737100.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max] gi|356576333|ref|XP_003556287.1| chr5 24930143 24938162 -
2 domain predictions
1 GO term
Lj5g3v2063160.1
n.a. PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Cicer arietinum] gi|502119986|ref|XP_004496809.1| chr5 29901588 29905461 +
2 domain predictions
1 GO term
LotjaGi1g1v0247100_LC.2
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|I1L964|I1L964_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0247100_LC LjG1.1_chr1 59378595 59385426 -
2 domain predictions
 –
LotjaGi1g1v0315000.1
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|I1KI28|I1KI28_SOYBN 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76092710 76099133 +
2 domain predictions
 –
LotjaGi1g1v0315000.2
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A072TNM1|A0A072TNM1_MEDTR 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095557 76097601 +
2 domain predictions
 –
LotjaGi1g1v0315000.3
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A072TNM1|A0A072TNM1_MEDTR 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095578 76097530 +
2 domain predictions
 –
LotjaGi1g1v0315000.4
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A178VE54|A0A178VE54_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095752 76096803 +
2 domain predictions
 –
LotjaGi1g1v0315000.5
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A178VE54|A0A178VE54_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095884 76096803 +
2 domain predictions
 –
LotjaGi1g1v0553100.1
n.a. Isocitrate lyase; TAIR: AT2G43180.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|V7AZV3|V7AZV3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0553100 LjG1.1_chr1 108492632 108498337 -
2 domain predictions
 –
LotjaGi1g1v0553100.2
n.a. Isocitrate lyase; TAIR: AT2G43180.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|A0A072TWC4|A0A072TWC4_MEDTR Phosphoenolpyruvate carboxylase-like protein; Found in the gene: LotjaGi1g1v0553100 LjG1.1_chr1 108492886 108498324 -
2 domain predictions
 –
LotjaGi1g1v0553200.1
n.a. Isocitrate lyase; TAIR: AT2G43180.2 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|A0A151TDD1|A0A151TDD1_CAJCA Putative carboxyvinyl-carboxyphosphonate phosphorylmutase; Found in the gene: LotjaGi1g1v0553200 LjG1.1_chr1 108499642 108502159 -
2 domain predictions
 –
LotjaGi1g1v0553300.1
n.a. Isocitrate lyase; TAIR: AT2G43180.4 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|A0A151TDD1|A0A151TDD1_CAJCA Putative carboxyvinyl-carboxyphosphonate phosphorylmutase; Found in the gene: LotjaGi1g1v0553300 LjG1.1_chr1 108513844 108517832 -
2 domain predictions
 –
LotjaGi1g1v0681400.1
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|I1JPV5|I1JPV5_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0681400 LjG1.1_chr1 124864079 124871161 +
2 domain predictions
 –
LotjaGi1g1v0681400.2
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|I1JPV5|I1JPV5_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0681400 LjG1.1_chr1 124864304 124870835 +
2 domain predictions
 –
LotjaGi1g1v0681400.3
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|A0A0R0EXX1|A0A0R0EXX1_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0681400 LjG1.1_chr1 124864304 124870835 +
2 domain predictions
 –
LotjaGi2g1v0065400.1
n.a. 2-keto-3-deoxy-L-rhamnonate aldolase; TAIR: AT4G10750.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|A4WEU6|GARL_ENT38 5-keto-4-deoxy-D-glucarate aldolase; TrEMBL-Plants: tr|A0A1J7IJR1|A0A1J7IJR1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0065400 LjG1.1_chr2 15231095 15241866 -
2 domain predictions
 –
LotjaGi2g1v0065400.2
n.a. 2-keto-3-deoxy-L-rhamnonate aldolase; TAIR: AT4G10750.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|A4WEU6|GARL_ENT38 5-keto-4-deoxy-D-glucarate aldolase; TrEMBL-Plants: tr|A0A1J7IJR1|A0A1J7IJR1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0065400 LjG1.1_chr2 15231106 15241774 -
2 domain predictions
 –
LotjaGi2g1v0137500.1
n.a. Pyruvate kinase; TAIR: AT5G52920.1 plastidic pyruvate kinase beta subunit 1; Swiss-Prot: sp|Q9FLW9|PKP2_ARATH Plastidial pyruvate kinase 2; TrEMBL-Plants: tr|A0A1J7GIR3|A0A1J7GIR3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0137500 LjG1.1_chr2 50253797 50260738 -
2 domain predictions
 –
LotjaGi2g1v0137500.2
n.a. Pyruvate kinase; TAIR: AT5G52920.1 plastidic pyruvate kinase beta subunit 1; Swiss-Prot: sp|Q9FLW9|PKP2_ARATH Plastidial pyruvate kinase 2; TrEMBL-Plants: tr|I1MPC6|I1MPC6_SOYBN Pyruvate kinase; Found in the gene: LotjaGi2g1v0137500 LjG1.1_chr2 50254390 50260246 -
2 domain predictions
 –
LotjaGi2g1v0157400.1
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|A0A072VP40|A0A072VP40_MEDTR Pyruvate kinase; Found in the gene: LotjaGi2g1v0157400 LjG1.1_chr2 55669945 55680497 +
2 domain predictions
 –
LotjaGi2g1v0157400.2
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BM17|KPYC2_ORYSI Pyruvate kinase 2, cytosolic; TrEMBL-Plants: tr|A0A072VP40|A0A072VP40_MEDTR Pyruvate kinase; Found in the gene: LotjaGi2g1v0157400 LjG1.1_chr2 55670335 55677951 +
2 domain predictions
 –
LotjaGi2g1v0157400.3
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|A0A072VP40|A0A072VP40_MEDTR Pyruvate kinase; Found in the gene: LotjaGi2g1v0157400 LjG1.1_chr2 55670335 55677951 +
2 domain predictions
 –
LotjaGi2g1v0157400.4
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|A0A072VP40|A0A072VP40_MEDTR Pyruvate kinase; Found in the gene: LotjaGi2g1v0157400 LjG1.1_chr2 55671237 55677951 +
2 domain predictions
 –
LotjaGi2g1v0157400.5
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|A0A072VP40|A0A072VP40_MEDTR Pyruvate kinase; Found in the gene: LotjaGi2g1v0157400 LjG1.1_chr2 55671389 55677951 +
2 domain predictions
 –
LotjaGi2g1v0157400.6
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|A0A072VP40|A0A072VP40_MEDTR Pyruvate kinase; Found in the gene: LotjaGi2g1v0157400 LjG1.1_chr2 55672214 55677951 +
2 domain predictions
 –
LotjaGi2g1v0236700.1
n.a. Pyruvate kinase; TAIR: AT5G08570.1 Pyruvate kinase family protein; Swiss-Prot: sp|Q42806|KPYC_SOYBN Pyruvate kinase, cytosolic isozyme; TrEMBL-Plants: tr|I3STS9|I3STS9_LOTJA Pyruvate kinase; Found in the gene: LotjaGi2g1v0236700 LjG1.1_chr2 69769070 69776138 -
2 domain predictions
 –
LotjaGi2g1v0415900.1
n.a. Pyruvate kinase; TAIR: AT1G32440.1 plastidial pyruvate kinase 3; Swiss-Prot: sp|Q40546|KPYG_TOBAC Pyruvate kinase isozyme G, chloroplastic; TrEMBL-Plants: tr|A0A151TJ29|A0A151TJ29_CAJCA Pyruvate kinase; Found in the gene: LotjaGi2g1v0415900 LjG1.1_chr2 91360708 91374479 -
2 domain predictions
 –
LotjaGi2g1v0415900.2
n.a. Pyruvate kinase; TAIR: AT1G32440.1 plastidial pyruvate kinase 3; Swiss-Prot: sp|Q40546|KPYG_TOBAC Pyruvate kinase isozyme G, chloroplastic; TrEMBL-Plants: tr|A0A151TJ29|A0A151TJ29_CAJCA Pyruvate kinase; Found in the gene: LotjaGi2g1v0415900 LjG1.1_chr2 91360708 91374479 -
2 domain predictions
 –
LotjaGi2g1v0415900.3
n.a. Pyruvate kinase; TAIR: AT1G32440.1 plastidial pyruvate kinase 3; Swiss-Prot: sp|Q40546|KPYG_TOBAC Pyruvate kinase isozyme G, chloroplastic; TrEMBL-Plants: tr|A0A151TJ29|A0A151TJ29_CAJCA Pyruvate kinase; Found in the gene: LotjaGi2g1v0415900 LjG1.1_chr2 91368215 91374189 -
2 domain predictions
 –