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LotjaGi1g1v0315000.3

Overview

Field Value
Gene ID LotjaGi1g1v0315000
Transcript ID LotjaGi1g1v0315000.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A072TNM1|A0A072TNM1_MEDTR 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:76095578..76097530) extracted from Lotus japonicus Gifu genome v1.2.

ATCGTAGCTAAACTCAGAGCAACAACCCAATGCTCCTCTCTTCTGAGGCGCATTCAGAGCATGAGCAACATTCCCGAAAA CACAGTGTACTCAGGACCCATTTCCCAGAACTCGAACCAGAGAGTGACGCTGTCCCAGTTGAGGCAGAAGCACAAGAAGT CCGAACCCATCTCCATGGTCACTGCCTACGATTACCCTTCCGCAGTGCACGTGGACATGGCCGGAATTGACATCTGCCTC GTCGGTGATTCCGCAGCCATGGTGGTTCACGGTTACGACACCACTCTTCCCATCACCATCGATGAAATGCTCGTTCATTG CCGCGCAGTGGCTCGTGGAGCCAAAACACCTCTTCTTGTTGGGGACTTGCCTTTTGGAACATATGAATGCAGCCCCAACC AGGTCATATGCTATAATTTATTTAAATTTTCTTATCTTTTTCAATATGGGTGGAATTTGTCACTTTTGGAGTTGAAATGT GTGTTTTGTTCCAAACAGGTCATGTGTGTTTTGTTTTTGGGAATTGATATGTGTAAGTGAAAAATGAAATTTAAAGGTTT TTGATATTAAGCGCTTGAGGTGTTTGTTTGTTTGTTTCACTCAATTGTTGAACTTTCTTACCTTTTGAAATGGTTGTAAG TGTTGCTGTTTTGGTTATGAGCAGGCAGTGGATGCTGCAGTACGGATTTTGAAAGAAGGGGGAATGGATGCCATAAAATT GGAAGGAGGGTCCCCTTCGAGAATTGTTGCTGCAAAAGCTATTGTTGAGGCTGGAATAGCAGTGATGGGGCATGTTGGGC TTACTCCCCAGGCCATTAGTGTTTTAGGGGGATTTAGACCTCAAGGAAGGAATGTTGCTAGTGCTGTCAAGGTCTATCTC TCTCTTGCATAATGCATCTATTTTGTATTTGAACAATTTTTTCGTCATCCTAAGAAGAATATGTCTGTGTAGGTTGTGGA GACGGCATTGGCTTTACAGGAAGCAGGGTGCTTCTCGGTTGTTCTAGAATGTGTGCCTGCCCCTGTGGCTGCTGCAGCAA CAGCAGCCCTTCAAATTCCGACAATCGGAATTGGAGCTGGACCCTTTTGCAGTGGACAGGTTCGTTTGCTTGATTTCTCT CTTAACTAGTATCTATTGATAAGATATTTTTATTAAGAGATGAGTGGTTTACATTTGTAGCACTTATTTGGTTTAGGTGA AAACACATCACCATTGCTTGATTTGAAGTCATTTATTCTTCATCAACTTGCTTTATTTGGCTTTTAAATCATGATGAGTT TGCTCTTAAATTATAGTTTCATTTCCCATGTATGCGTCTAGATTTTACTGAGTTGGAGAATATGACAAGATTTGTTTGAG TCTCTTGAGTCTTGACTACCTGAAGCTATAGATGGATGTAGCTCTAGTTTAATTATTTCTCAGTTATTTTGGCATGATTA GACAAAGCGCTATTTGTGCATTTACAACTTTACCTGGCACTTGTTCTTCTGGGGAATCTGGTTTCAGATGAAGCCAATAA TGTCTAATTAGTTTTATTATTCATGCAGGTGCTAGTTTATCATGATCTGCTTGGTATGCTACAACACCCCCACCATGCAA AGGTGCTTAATGCAAAGCAATTATTAACCTAGTTGTTCTTTCTTTCATTATGGGATTCAAAATAAAGTTGAGATTATCTA TATCTTTCACAGGTTACTCCAAAATTTTGTAAGCAATATGCCCGTGTTGGAGATGTCATCACTAAAGCATTAGTGGAGTA TAAGGAAGATGTGATAAATGGTTCATTTCCTGATGCTCAGCATAGCCCATATAAGATCAGTGAAACAGATGCTAATGGTT TCTTAAATGAGTTGCAAAGGTTAGGTTTTGACAAGGCAGCATCTGCGGTGTCTGATGCAGTTCAGAAAATGGTTACAAAC AAGTCAATTGGTGAAAGAAACTCAACAAAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0315000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCAACATTCCCGAAAACACAGTGTACTCAGGACCCATTTCCCAGAACTCGAACCAGAGAGTGACGCTGTCCCAGTT GAGGCAGAAGCACAAGAAGTCCGAACCCATCTCCATGGTCACTGCCTACGATTACCCTTCCGCAGTGCACGTGGACATGG CCGGAATTGACATCTGCCTCGTCGGTGATTCCGCAGCCATGGTGGTTCACGGTTACGACACCACTCTTCCCATCACCATC GATGAAATGCTCGTTCATTGCCGCGCAGTGGCTCGTGGAGCCAAAACACCTCTTCTTGTTGGGGACTTGCCTTTTGGAAC ATATGAATGCAGCCCCAACCAGGCAGTGGATGCTGCAGTACGGATTTTGAAAGAAGGGGGAATGGATGCCATAAAATTGG AAGGAGGGTCCCCTTCGAGAATTGTTGCTGCAAAAGCTATTGTTGAGGCTGGAATAGCAGTGATGGGGCATGTTGGGCTT ACTCCCCAGGCCATTAGTGTTTTAGGGGGATTTAGACCTCAAGGAAGGAATGTTGCTAGTGCTGTCAAGGTTGTGGAGAC GGCATTGGCTTTACAGGAAGCAGGGTGCTTCTCGGTTGTTCTAGAATGTGTGCCTGCCCCTGTGGCTGCTGCAGCAACAG CAGCCCTTCAAATTCCGACAATCGGAATTGGAGCTGGACCCTTTTGCAGTGGACAGGTGCTAGTTTATCATGATCTGCTT GGTATGCTACAACACCCCCACCATGCAAAGGTTACTCCAAAATTTTGTAAGCAATATGCCCGTGTTGGAGATGTCATCAC TAAAGCATTAGTGGAGTATAAGGAAGATGTGATAAATGGTTCATTTCCTGATGCTCAGCATAGCCCATATAAGATCAGTG AAACAGATGCTAATGGTTTCTTAAATGAGTTGCAAAGGTTAGGTTTTGACAAGGCAGCATCTGCGGTGTCTGATGCAGTT CAGAAAATGGTTACAAACAAGTCAATTGGTGAAAGAAACTCAACAAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0315000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNIPENTVYSGPISQNSNQRVTLSQLRQKHKKSEPISMVTAYDYPSAVHVDMAGIDICLVGDSAAMVVHGYDTTLPITI DEMLVHCRAVARGAKTPLLVGDLPFGTYECSPNQAVDAAVRILKEGGMDAIKLEGGSPSRIVAAKAIVEAGIAVMGHVGL TPQAISVLGGFRPQGRNVASAVKVVETALALQEAGCFSVVLECVPAPVAAAATAALQIPTIGIGAGPFCSGQVLVYHDLL GMLQHPHHAKVTPKFCKQYARVGDVITKALVEYKEDVINGSFPDAQHSPYKISETDANGFLNELQRLGFDKAASAVSDAV QKMVTNKSIGERNSTK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20881
14 305 292 2.9E-144
IPR003700
Gene3D
G3DSA:3.20.20.60
19 300 282 6.2E-117
IPR040442
Pfam
PF02548
21 284 264 2.7E-108
IPR003700
SUPERFAMILY
SSF51621
21 287 267 1.37E-95
IPR015813
Hamap
MF_00156
22 289 268 40.248
IPR003700
TIGRFAM
TIGR00222
23 288 266 2.9E-89
IPR003700
CDD
cd06557
24 283 260 2.71009E-140
IPR003700

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0003864
Molecular function 3-methyl-2-oxobutanoate hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate.
Subterm of
GO:0015940
Biological process Pantothenate biosynthetic process The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0315000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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