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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005062
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.121s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v1855370.1
n.a. PREDICTED: 80 kDa MCM3-associated protein-like isoform X1 [Cicer arietinum] gi|502168054|ref|XP_004514308.1| chr3 23625572 23634009 -
2 domain predictions
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Lj5g3v2288990.1
n.a. Leukocyte receptor cluster member-like protein [Medicago truncatula] gi|357461645|ref|XP_003601104.1| chr5 33448412 33457858 -
2 domain predictions
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Lj5g3v2288990.2
n.a. PREDICTED: leukocyte receptor cluster member 8 homolog isoform X3 [Cicer arietinum] gi|502117423|ref|XP_004495816.1| chr5 33448412 33457858 -
2 domain predictions
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Lj6g3v1901400.1
n.a. G1121 protein [Medicago truncatula] gi|357447585|ref|XP_003594068.1| chr6 21300919 21319965 -
2 domain predictions
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LotjaGi3g1v0311800.1
n.a. SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein; TAIR: AT3G54380.1 SAC3/GANP/Nin1/mts3/eIF-3 p25 family; Swiss-Prot: sp|Q67XV2|SAC3C_ARATH SAC3 family protein C; TrEMBL-Plants: tr|A0A0B2PLU1|A0A0B2PLU1_GLYSO 80 kDa MCM3-associated protein; Found in the gene: LotjaGi3g1v0311800 LjG1.1_chr3 66030249 66041576 -
2 domain predictions
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LotjaGi5g1v0359900.1
n.a. SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein; TAIR: AT2G39340.1 SAC3/GANP/Nin1/mts3/eIF-3 p25 family; Swiss-Prot: sp|F4IUY8|SAC3A_ARATH SAC3 family protein A; TrEMBL-Plants: tr|A0A0S3SL83|A0A0S3SL83_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0359900 LjG1.1_chr5 67442666 67452573 -
2 domain predictions
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LotjaGi5g1v0359900.2
n.a. SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein; TAIR: AT2G39340.1 SAC3/GANP/Nin1/mts3/eIF-3 p25 family; Swiss-Prot: sp|F4IUY8|SAC3A_ARATH SAC3 family protein A; TrEMBL-Plants: tr|A0A0R0EFN0|A0A0R0EFN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0359900 LjG1.1_chr5 67443381 67451375 -
2 domain predictions
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LotjaGi5g1v0359900.3
n.a. SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein; TAIR: AT2G39340.1 SAC3/GANP/Nin1/mts3/eIF-3 p25 family; Swiss-Prot: sp|F4IUY8|SAC3A_ARATH SAC3 family protein A; TrEMBL-Plants: tr|A0A0R0ES49|A0A0R0ES49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0359900 LjG1.1_chr5 67443381 67451375 -
2 domain predictions
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LotjaGi6g1v0302600.1
n.a. SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein; TAIR: AT3G06290.1 SAC3/GANP/Nin1/mts3/eIF-3 p25 family; Swiss-Prot: sp|F4JAU2|SAC3B_ARATH SAC3 family protein B; TrEMBL-Plants: tr|I1MFA7|I1MFA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0302600 LjG1.1_chr6 61985895 62003627 -
2 domain predictions
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