Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj0g3v0173139 |
| Transcript ID | Lj0g3v0173139.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pre-mRNA-processing factor [Medicago truncatula] gi|357440851|ref|XP_003590703.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | – | – | |
| PANTHER | 58 | 209 | 152 | 4.30E-260 | – | |
| PANTHER | 58 | 209 | 152 | 4.30E-260 | ||
| MobiDBLite | 154 | 191 | 38 | – | – | |
| PANTHER | 228 | 584 | 357 | 4.30E-260 | ||
| PANTHER | 228 | 584 | 357 | 4.30E-260 | – | |
| Gene3D | 271 | 584 | 314 | 4.20E-78 | ||
| SUPERFAMILY | 281 | 584 | 304 | 3.66E-75 | ||
| SMART | 283 | 323 | 41 | 3.20E-09 | ||
| Pfam | 285 | 323 | 39 | 1.90E-06 | ||
| CDD | 286 | 584 | 299 | 3.86E-69 | – | |
| ProSiteProfiles | 290 | 584 | 295 | 48.143 | ||
| ProSiteProfiles | 290 | 324 | 35 | 13.048 | ||
| PRINTS | 310 | 324 | 15 | 5.80E-06 | ||
| ProSitePatterns | 310 | 324 | 15 | – | ||
| SMART | 327 | 366 | 40 | 3.60E-11 | ||
| Pfam | 328 | 366 | 39 | 1.50E-07 | ||
| ProSiteProfiles | 334 | 375 | 42 | 15.822 | ||
| PRINTS | 353 | 367 | 15 | 5.80E-06 | ||
| SMART | 369 | 410 | 42 | 5 | ||
| SMART | 413 | 452 | 40 | 2.60E-06 | ||
| Pfam | 414 | 451 | 38 | 0.0012 | ||
| ProSiteProfiles | 420 | 452 | 33 | 12.614 | ||
| PRINTS | 439 | 453 | 15 | 5.80E-06 | ||
| SMART | 456 | 495 | 40 | 18 | ||
| SMART | 501 | 541 | 41 | 0.0013 | ||
| Pfam | 504 | 541 | 38 | 8.70E-06 | ||
| ProSiteProfiles | 519 | 550 | 32 | 8.938 | ||
| SMART | 544 | 584 | 41 | 5.70E-06 | ||
| Pfam | 547 | 584 | 38 | 0.084 | ||
| ProSiteProfiles | 551 | 584 | 34 | 8.57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Catalytic step 2 spliceosome | A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. |
Expression pattern of Lj0g3v0173139.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj0g3v0173139.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.