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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0388100 |
| Transcript ID | LotjaGi2g1v0388100.8 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88440188..88443455) extracted from Lotus japonicus Gifu genome v1.2.
CATTAATCCCACGTGACCATGTCACATGGGGCCACCGGAGCTCCGGCGTTGATCCAGAGCTCCGGAGGGACCAAAACCAA ACATTTTGGCAAAGGTTAGGGACTAAAACCCACCTTTACTCCGACGAGGGACGAAAACCAAGCATTTTGTAAAAGTTAGG GACAAAAACTTATTTAAGCCTAAAGTTTACAAAAAATACAGAATCAGTGGCCCCGATATGAAGACTAGTTGAAGGAGCCA ATATGGACTAAAGAAGATGGCATTTGACTAGATGCATATCTGTTTAGTAGGTGTCAGGGGGTGGGTGGCTACACTGGGAA CCTTATAAATACCAAGCAAAGTGTTGTTCTGTAACTCACTGCTTGTTTGATTACGTTCACTAGTGCCACTACTGCTTGTG TTGTTAATTTCACAACAAATTAAGTTCTAATTGTTCTGATGGCACCACAAGACAGAATCCTTGTGATCGGACCCACAGGA GCAATTGGAAGACATGTAATTTGGGCAAGTGTCAAAGCAGGAAACCCAACATACGCTTTGGTGAGGAAGAACAGTGTCAC TATTGAGAAGCCAAAGCTCATCACAGCTGCTAATCCTGAAACCAAAGAAGAGCTCATCGACAACTTCAAAAGTTTAGGAG TTATTCTCCTAGAGGTATGTAAATATGTGACTTGAATATGTATATGAGTCTGTTTGATTGCGCGAACACTTATCGGAGCT TATTTGGTGCCTTTTTAGTAGATAAGCTCCAATAAGTGCTCTGTGTCCAAACAGGACATATATTCATTTCAATTTTACAA TTAATCTCAATTCTTCTGATTATGTTTGATTAATTGTGCATGATGCTGCAGGGTGACATAAGTGATCATAATAGTTTGGT TAAGGCATTGAAGCAAGTTGATATTGTCATCTGCACAACAGGAAGACTTTTAATTCTAGATCAGGTCAAGATCATTGCAG CAATCAAGGAAGCTGGAAACATCAAAGTAACTAACTTATTTGTTCATTTTATTTAATAATTATCTCTGGTTCAATTTGCT TAGTGCTAATTGAATCTTGAATTTTGATGTGAAACAGAGGTTTTTCCCTTCTGAATTTGGGTTAGATGTGGACCGCCATG AAGCAGTGGACCCAGTGAGGGAAGTTTTCGTCGAAAAAGCAGGAATCAGAAGAGTAGTGGAAGCTGAAGGAATTCCTTAC ACTTACCTCTGTTGCCATGCCTTCACTGGTTACTTCTTGCGTAACTTGGCTCAACTTGATGCCACTGTTCCTCCTCGTGA CAAGGTCATCATTCTAGGAGATGGAAATGTCAAAGGTAATCATCTAACAATCACAAACATGAAACACCTCAATTAGTCCA TTCTAAACAGTTTTAGCACACACAGTAATGTTTGATGAATTGCTTCAATAAGGGTGTATATTGATTATATATTTGATTTA CTTGTTAATTTCAGGAGCTTATATCACTGAGGCAGATGTGGGGACTTTCACCGTCTTAGCCGCGAACGATCCCAGAACAT TGAACAAGGCTGTCCACATAAGACTCCCTGCTAATTATTTGACAGCAAATGAGATCATGGCATTGTGGGAGAAGAAGATT GGGAAGACTTTGGAGAAAACCTATGTTCCTGAGGAACAAGTTCTTAAGGACATCAAGGGTCAGTTACAAAAACTCATTTT AATTAGACTTCACAATATTCAACTAAACATGAGTATTAATTATGTTACATACTTACATGCATCAATTTACTTAAATTAAT TAATGATCTTGTTTTGATTTCTGATGTGGGTGTTTATGTTTTTGCAACAGAATCTGGTTTCCCTCACAACTACCTATTGG CTCTGTACCACTCACAGCAGTTAAAGGGAGATGCAGTGTATGAGATTGACCCTGCCAAGGATGCTGAGGCTCATGAGCTT TACCCTGATGTCAAATTCACCACCGTAGATGAATATTTGAACCAGTTTGTCTGAATTTTGAGAAAAAAATGATTTATCAG GCTTTAAACTATTTCCATTGTTTGTTATTTGTGCCTGTCCTCTCGTGAATAATCACATCCCGTTGATGTAATTCATTTTG AATAATATAATCTCTTTTGTCCTCCTATTGTATGGCTGCTCAGTGCTCACACTTGTTCATTGGACCTTTCTCCCGGCCAC GGGACAAGAAAAAACAGGCAGGGGTGGAAATTAAATTAACATCACTAAATAAAATTTTCAGTGACTACAAAATTATATAA CATTTATTATTAGCAATTATGTAAAATTTAAATCATGCAAAATAACATATATTTCATAAAACTAGACATGACATGTGCAT TTCCTTTCAATAATCAAAATTATGCTACAACAAATACCATCAATTGTCTTAAGCTTCGGTTATTTTCCAAGCTTGCTTTC CAAATAATATTTAGATGTACTAGAGATTGGTTCTTGCTATCCTTAATATTTGACAGATATATGAGGAGAGACGATAATTT TCCTTCAAGGACAATGTACTCCTTCTTCATTGATTTTCTTACATTTACAAAACCCATCAGCTATAAATGCAGTTGTTGTC TGGTTCATTCTTGCCAAAGAGATAACACGATAGACAATAAATACCATCATTCTCAAGTGAGTGCACCAACCAGCATGAAT GTGCTTCGAACCAATAAGCTTGAAATTGTTAACATTATCAACTTCTCATAAAAAAAGAAATTATATATTTCTTGATTGAT ATTGACCGACCTTGAGATAAACACAATGGATTTCATTTCTTTGATTAAAAGGAAACTCAAATTATTGCACGCAATCTAAG ATCACAATCTAATCAATAGCACCCATTTTTATAGCTACATTATTCTACATTTTGAAGGTCATTCATCTTGTGGTGGAATA TTTAAGCATGTACTAACATTTAATGATATAGCAGTAGTTTGAGGTTGATTGCCATCATTGAACTCATTCTTCTTAAAGAA TTAATCAATAGTTTTTTGAATTGACAAATTTCAACAGCATTGTGAAAAGATCGTTGTGCAGCTGTTATTCCCTACATATG TCCTTGATCTATGCGATTTGGGAGACTAGAAGTCATCTTATTTTTAAGGGTGTCCAACCTTCACACGAGCGACTTATGAC AAGCACTTCATCCTTAATGGTTTCGTCCCACTCCCGTAAGATCAAATGCACATTCCATCGTGGGCTTCCTTCCTCTTGGC AACGACCTTCTGATGATGTTGCGAAGGTTAATTTTGACGCGTCGTGAAGGACGCACGCTTGGGGCTCG
CDS sequence (LotjaGi2g1v0388100.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCACAAGACAGAATCCTTGTGATCGGACCCACAGGAGCAATTGGAAGACATGTAATTTGGGCAAGTGTCAAAGC AGGAAACCCAACATACGCTTTGGTGAGGAAGAACAGTGTCACTATTGAGAAGCCAAAGCTCATCACAGCTGCTAATCCTG AAACCAAAGAAGAGCTCATCGACAACTTCAAAAGTTTAGGAGTTATTCTCCTAGAGGGTGACATAAGTGATCATAATAGT TTGGTTAAGGCATTGAAGCAAGTTGATATTGTCATCTGCACAACAGGAAGACTTTTAATTCTAGATCAGGTCAAGATCAT TGCAGCAATCAAGGAAGCTGGAAACATCAAAAGGTTTTTCCCTTCTGAATTTGGGTTAGATGTGGACCGCCATGAAGCAG TGGACCCAGTGAGGGAAGTTTTCGTCGAAAAAGCAGGAATCAGAAGAGTAGTGGAAGCTGAAGGAATTCCTTACACTTAC CTCTGTTGCCATGCCTTCACTGGTTACTTCTTGCGTAACTTGGCTCAACTTGATGCCACTGTTCCTCCTCGTGACAAGGT CATCATTCTAGGAGATGGAAATGTCAAAGGAGCTTATATCACTGAGGCAGATGTGGGGACTTTCACCGTCTTAGCCGCGA ACGATCCCAGAACATTGAACAAGGCTGTCCACATAAGACTCCCTGCTAATTATTTGACAGCAAATGAGATCATGGCATTG TGGGAGAAGAAGATTGGGAAGACTTTGGAGAAAACCTATGTTCCTGAGGAACAAGTTCTTAAGGACATCAAGGAATCTGG TTTCCCTCACAACTACCTATTGGCTCTGTACCACTCACAGCAGTTAAAGGGAGATGCAGTGTATGAGATTGACCCTGCCA AGGATGCTGAGGCTCATGAGCTTTACCCTGATGTCAAATTCACCACCGTAGATGAATATTTGAACCAGTTTGTCTGA
Protein sequence (LotjaGi2g1v0388100.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPQDRILVIGPTGAIGRHVIWASVKAGNPTYALVRKNSVTIEKPKLITAANPETKEELIDNFKSLGVILLEGDISDHNS LVKALKQVDIVICTTGRLLILDQVKIIAAIKEAGNIKRFFPSEFGLDVDRHEAVDPVREVFVEKAGIRRVVEAEGIPYTY LCCHAFTGYFLRNLAQLDATVPPRDKVIILGDGNVKGAYITEADVGTFTVLAANDPRTLNKAVHIRLPANYLTANEIMAL WEKKIGKTLEKTYVPEEQVLKDIKESGFPHNYLLALYHSQQLKGDAVYEIDPAKDAEAHELYPDVKFTTVDEYLNQFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 318 | 318 | 3.1E-181 | – | |
| PANTHER | 1 | 318 | 318 | 3.1E-181 | – | |
| SUPERFAMILY | 5 | 292 | 288 | 1.95E-56 | ||
| CDD | 6 | 313 | 308 | 2.26344E-84 | – | |
| Gene3D | 7 | 302 | 296 | 1.7E-122 | – | |
| Pfam | 7 | 249 | 243 | 3.8E-79 | ||
| Gene3D | 163 | 313 | 151 | 1.7E-122 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0388100.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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