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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR22930:SF175
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.014s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0057500_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061FY73|A0A061FY73_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0057500_LC LjG1.1_chr1 8050649 8052306 -
1 domain prediction
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LotjaGi1g1v0236100_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2PHB6|A0A0B2PHB6_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0236100_LC LjG1.1_chr1 56067432 56068509 +
1 domain prediction
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LotjaGi1g1v0313100.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0313100 LjG1.1_chr1 75730811 75737523 +
1 domain prediction
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LotjaGi1g1v0313100.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0313100 LjG1.1_chr1 75730811 75737523 +
1 domain prediction
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LotjaGi1g1v0377500_LC.2
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0377500_LC LjG1.1_chr1 85720455 85720968 +
1 domain prediction
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LotjaGi2g1v0128700_LC.1
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0128700_LC LjG1.1_chr2 47074396 47075479 +
1 domain prediction
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LotjaGi2g1v0165700_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57575099 -
1 domain prediction
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LotjaGi2g1v0165700_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57575099 -
1 domain prediction
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LotjaGi2g1v0165700_LC.3
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57582141 -
1 domain prediction
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LotjaGi2g1v0279400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0279400_LC LjG1.1_chr2 75092369 75092880 +
1 domain prediction
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LotjaGi3g1v0427200_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi3g1v0427200_LC LjG1.1_chr3 83831768 83832377 -
1 domain prediction
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LotjaGi4g1v0050400.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2PHB6|A0A0B2PHB6_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi4g1v0050400 LjG1.1_chr4 6103517 6106875 +
1 domain prediction
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LotjaGi5g1v0182700_LC.1
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi5g1v0182700_LC LjG1.1_chr5 46531929 46534130 +
1 domain prediction
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