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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0050400 |
| Transcript ID | LotjaGi4g1v0050400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2PHB6|A0A0B2PHB6_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi4g1v0050400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6103517..6106875) extracted from Lotus japonicus Gifu genome v1.2.
CACTCTCTCGTTCTCGCTCCCAATCTCACTCTCTCTGCAATCTCGCTCTTTCGATCTCGTTCTCGCTCCCGATCTCACCC TCTCGCGATCTCGTTCTCTCGTTCTCGCTCTTCCGATCTCACCCTCTCGCGATCTCGTTCTCTCGTTCTCGCTCTCCCGA TCTCACTCTCTCTGCAAATCCCGATCTCACTCTCTCTGCGATCTCGCTCTCTCGTTCTTGCTCTCCCGATTCATGGAGTG GCTCTATCTTCCCTCTTGATTCAGGTAAAATCTCTTGATTCTTTCACAAATTTTGCAGTATTGTTGTTGTGGTTGTTGTT GTTTTTTCGATTTGATTTTGTTTTTGGAGTTGAAAATATCTGTTTTGTTCTTGTCTTGAGTTTTGTTCGTTGATGCTAGT ACTGGGTTTGTGATGTTTTTTTTCTCCATTTTGTGCATGGTTCAGAAGCAGATGAACATAGGTGAGGAAGGCAATAGTTT CTATTTTTTTACCAAAACAATAATTAGAGTTACATAAGAATTGCTCAAACTGAATCTGAAAATTGACTAGGCCTCAATTC ATGTGTAAATCAAAGGTACTTTAATCCTCTGTTGCTCTTGGCCTTGACCCACCTTGATTTCCAACCACCCTTTTGGAATT TCTTTGGTCCTTCCATGGTGATGGTATGCTTTTGTAGGTGTATTTCTAGATTAGGATGGTTTTGGGGAGAAACAAAGGGA CAAAAACCCATTATGCAGAGAAGGAGTTTGATGAATAAAGAGTATTTTTATAGCAAGTAGCAATAGCATGATGTGTGTTA TATATAATAAGGTGCATTGCATTCCTCAAGCATTATTCAAGTTGTCATGACAGTGATTTGATTTGTGTTTATTGTCACTG TCTTTTGCTAATCCTTGATGATCGGAAAAATATTTCAGGCTACTGCTATAAGTGGATACACTAGCAACTCTGCTTCTGCC AAGAAGTGCAGAAAGAAGAAGGTAAAGTTATTCATTTCATCTTATAGTCAAGCCTGTGATTTTAATATTTGTAGTGAGTT TTATTTCAAAACAACCATGGACATATTAGGATAGAAAGAACTTTTCACTACACTTCAAACGTTCATTGCTGCTGCTATAT TGTCTTGCTATAATAACTAGGTAGTATTAAAAGATGAATTAATTTATCAGCAAAAAGAATTTATGGAGTAAAGGAGATTT TATTACATTTTCATTGCTGTGGTTATTCCGGAATAGATTAAGTTTAGTTGGAAAAGGGGTCCATCAACTCTGCTACTATG TCCAAGTTTAGTTTTATAATCTGCACAGAGATAAGAATTGCAGCTTATAGTCTGAATTGATTTTAGAACATTTCATCATA AAACCAAACACATATATATGTTTATTTCATTTGGTCAATGGATGAGGGGGAAAGCTTTTTCATGAGTAGCTTCCATATTG TCTATGAGAAAAGAGAAATTTATTGAAACATGTTAGAAATCACTCATCCATAATGGAAAACTAAGACAAGAGGAAAAAAC TCAATGCTTACTTATTTTTTTATTTATTTTAATGAATCTAACCGAAAGCTCCACGCTACTATTTAGAGAATGTTTTAACT TGACTCTTCTCATTTTCTTAGTGAGCTTGTACACATCCCTTGTCCTTTTTAATCACATCTTATCCATTTTTATGTTTAAA CTAGCTGATTTTGAATCTGATTGAGTTAGCTTCTCTTACTTCCTATTTTCTTTATAGTGTCATGCAATATTGATGTTTTA TTATATGTTTTTTTTAGTTAACAAATGGATCTTAGAGTAGTTGACACTTCAGTTCTTTTACGAAAACGTAAAAGAAATGA AGAAGAAGAAGAGGCAAAATTGCAGGAGCAAATAGCATTCATTGTTGCTAGTGTCATTGCTATGCTTTTAGGTGTAGTAG CTTGGTATCATGAGATGCATTTTGTTAAGGAACCGTCCCGAAATTGGGAATTGGAAAGAAGCAATTTCCTTAATCGTCTG TATAGAGGAACCGAAAGTGACTGCATTGAACAGTTAAGAGTCAGTAAAAGGGCATTTTTTAAACTTTGTGGAATTTTACA AGATAAAGGACAGTTGGTAAGGACAAGAAATGTCCCAACGATTGAAGCAGTGGCAATGTTTTTGCATATCCTTGCTCACA ACCTAAAGTATAGAGTAGTGCACTTTACCTATTATAGATCCAAAGAAACAATAAGTAGGCAATTCAACAATGTCCTACGA GCTGTAATGAAAGTGAGTGGGGAATATTTGAAGTTTCAAGACCATAATAATCTAGAGGGCTCTGAGGCATACAAATGGAG ATGGTTTCAGGTAAACTTATCATAAGCTTGAGTAATTATATGAGATTTCTAGTAATTACAACTTATTTTTTATTTTTAAA CTTTTTTAGAATTCGATTGGAGCACTTGATGGGACACATATTCCAGTAACAGTGGCAGCAGAAGATAAACCTAGATACCG TAATAGAAAGGGTGACATCTCTACGAATGTGTTAGGGGTTTGTGGTCCAGATTTAAAGTTTATTTACGTGTTACCTGGTT GGGAAGGCTCGGCAGGAGATTCACGAGTATTGCGAGATGCTTTACGTCGTCAAAATCACCTTCAAATTCCGAATGGTAAT ATTCTCAACCTTGATACTTTTTTTACTATATTAAATACAATTATATGATTTTTTTTCTTGGAAAAAAACCATCGCAGGTA AATACTTTCTGGTCGACGCAGGATATACAAATGGCCCAGGATTTTTAGCACCTTATCGAGGGACTAGATATCATCTCAAT GAGTGGATTGGAAACACCCCTCAAAACTACAAGGAGTTGTTCAATCTCCGTCATGAAAGTGCAAGGAATGTAATTGAAAG ATCATTTGGGATATTGAAAAAACGATGGAGTATATTAAGAACTCCATCTTTTTTTGATATAAAAACACAAATAAGAATGA TTAACGCTTGTTTCGTACTGCACAATTTTATAAGAGATGAACAACAATATGACCCAATTTTAGAGGTCCAAGACTTGGAG CTTTTATCGGTTGTTGATGAAGAGTTAACCAATCAACATGGGGAAACAATTACAAGTAATGTTGCAAATGAGATCACAAC TATTCAAGTATCTGAGGCATGGACAACGTTTCGGGACACTTTAGCAATGGATATGTTTGTTGAATATCAACATAGAAGAA ACTTAGTTTAGGGACAACATGTTATCAGTTGTCTTTGCTTTCTACCTTGTTCGCTGTTTCTATTATCTGTTTTTCCATTT CTTATGTTGTTTCTTGTTTATTTCTGTAGTTGCTTTGTTCTGTTGTGTGTTGGCTCACTTGGAAGAGCCTTGTTTCCAA
CDS sequence (LotjaGi4g1v0050400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTAGAGTAGTTGACACTTCAGTTCTTTTACGAAAACGTAAAAGAAATGAAGAAGAAGAAGAGGCAAAATTGCA GGAGCAAATAGCATTCATTGTTGCTAGTGTCATTGCTATGCTTTTAGGTGTAGTAGCTTGGTATCATGAGATGCATTTTG TTAAGGAACCGTCCCGAAATTGGGAATTGGAAAGAAGCAATTTCCTTAATCGTCTGTATAGAGGAACCGAAAGTGACTGC ATTGAACAGTTAAGAGTCAGTAAAAGGGCATTTTTTAAACTTTGTGGAATTTTACAAGATAAAGGACAGTTGGTAAGGAC AAGAAATGTCCCAACGATTGAAGCAGTGGCAATGTTTTTGCATATCCTTGCTCACAACCTAAAGTATAGAGTAGTGCACT TTACCTATTATAGATCCAAAGAAACAATAAGTAGGCAATTCAACAATGTCCTACGAGCTGTAATGAAAGTGAGTGGGGAA TATTTGAAGTTTCAAGACCATAATAATCTAGAGGGCTCTGAGGCATACAAATGGAGATGGTTTCAGAATTCGATTGGAGC ACTTGATGGGACACATATTCCAGTAACAGTGGCAGCAGAAGATAAACCTAGATACCGTAATAGAAAGGGTGACATCTCTA CGAATGTGTTAGGGGTTTGTGGTCCAGATTTAAAGTTTATTTACGTGTTACCTGGTTGGGAAGGCTCGGCAGGAGATTCA CGAGTATTGCGAGATGCTTTACGTCGTCAAAATCACCTTCAAATTCCGAATGGTAAATACTTTCTGGTCGACGCAGGATA TACAAATGGCCCAGGATTTTTAGCACCTTATCGAGGGACTAGATATCATCTCAATGAGTGGATTGGAAACACCCCTCAAA ACTACAAGGAGTTGTTCAATCTCCGTCATGAAAGTGCAAGGAATGTAATTGAAAGATCATTTGGGATATTGAAAAAACGA TGGAGTATATTAAGAACTCCATCTTTTTTTGATATAAAAACACAAATAAGAATGATTAACGCTTGTTTCGTACTGCACAA TTTTATAAGAGATGAACAACAATATGACCCAATTTTAGAGGTCCAAGACTTGGAGCTTTTATCGGTTGTTGATGAAGAGT TAACCAATCAACATGGGGAAACAATTACAAGTAATGTTGCAAATGAGATCACAACTATTCAAGTATCTGAGGCATGGACA ACGTTTCGGGACACTTTAGCAATGGATATGTTTGTTGAATATCAACATAGAAGAAACTTAGTTTAG
Protein sequence (LotjaGi4g1v0050400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLRVVDTSVLLRKRKRNEEEEEAKLQEQIAFIVASVIAMLLGVVAWYHEMHFVKEPSRNWELERSNFLNRLYRGTESDC IEQLRVSKRAFFKLCGILQDKGQLVRTRNVPTIEAVAMFLHILAHNLKYRVVHFTYYRSKETISRQFNNVLRAVMKVSGE YLKFQDHNNLEGSEAYKWRWFQNSIGALDGTHIPVTVAAEDKPRYRNRKGDISTNVLGVCGPDLKFIYVLPGWEGSAGDS RVLRDALRRQNHLQIPNGKYFLVDAGYTNGPGFLAPYRGTRYHLNEWIGNTPQNYKELFNLRHESARNVIERSFGILKKR WSILRTPSFFDIKTQIRMINACFVLHNFIRDEQQYDPILEVQDLELLSVVDEELTNQHGETITSNVANEITTIQVSEAWT TFRDTLAMDMFVEYQHRRNLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| Coils | 9 | 29 | 21 | - | – | |
| Phobius | 30 | 49 | 20 | - | – | |
| TMHMM | 30 | 49 | 20 | - | – | |
| Phobius | 50 | 421 | 372 | - | – | |
| PANTHER | 59 | 368 | 310 | 1.8E-94 | – | |
| PANTHER | 59 | 368 | 310 | 1.8E-94 | – | |
| Pfam | 188 | 347 | 160 | 6.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0050400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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