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IPR003834

Source: InterPro

Description

IPR003834 is a Cytochrome C biogenesis protein, transmembrane domain.

<p>This entry represents the transmembrane domain of Cytochrome C biogenesis proteins also known as disulphide interchange proteins, such as DsbD from E. coli and DipZ from Mycobacterium. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.</p> <p>DsbA and DsbC, periplasmic proteins of E. coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions [[cite:PUB00008276]]. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [[cite:PUB00008277]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0017004
Biological process Cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Associated Lotus transcripts 3

Transcript Name Description Predicted domains Domain count
Lj0g3v0197329.1
– Chloroplast biogenesis protein [Lotus japonicus] gi|27464259|gb|AAO16018.1|
Domains
8
Lj0g3v0197339.1
– Chloroplast biogenesis protein [Lotus japonicus] gi|27464259|gb|AAO16018.1|
Domains
8
LotjaGi3g1v0323200.1
– Cytochrome c-type biogenesis ccda-like chloroplastic protein; TAIR: AT5G54290.1 cytochrome c biogenesis protein family; Swiss-Prot: sp|Q2QY07|CCDA2_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 2; TrEMBL-Plants: tr|Q8GZD1|Q8GZD1_LOTJA Chloroplast biogenesis protein; Found in the gene: LotjaGi3g1v0323200
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 33.33