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IPR032881

Source: InterPro

Description

IPR032881 is a Oberon-like, PHD finger domain.

<p>This entry represents a plant homeodomain (PHD) finger domain of Oberon proteins from plants. Oberon is necessary for maintenance and/or establishment of both the shoot and root apical meristems in Arabidopsis. Oberon proteins are made up of a PHD finger domain and a coiled-coil domain. The PHD-finger domain is found in a wide variety of proteins involved in the regulation of chromatin structure [[cite:PUB00067922]]. Oberon proteins mediate the TMO7 (the direct target of MP) expression through modification of, or binding to, chromatin at the TMO7 locus. TMO7 stands for the target of Monopteros 7 (MP) (or Auxin response factor 7) [[cite:PUB00076514]].</p> <p>This domain can also be found in protein VERNALIZATION INSENSITIVE 3 (VIN3) and related proteins. VIN3 is involved in both the vernalization and photoperiod pathways in Arabidopsis [[cite:PUB00076963]]. VIN3-like protein 1 (also known as VRN5) functions in the epigenetic silencing of Arabidopsis FLOWERING LOCUS C [[cite:PUB00076964]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 33

Transcript Name Description Predicted domains Domain count
Lj0g3v0001909.1
– PREDICTED: OBERON-like protein-like [Glycine max] gi|356547843|ref|XP_003542314.1|
Domains
14
Lj0g3v0089799.1
– PREDICTED: OBERON-like protein-like [Glycine max] gi|356547843|ref|XP_003542314.1|
Domains
14
Lj0g3v0089809.1
–
Domains
9
Lj0g3v0176879.1
– PREDICTED: protein OBERON 3-like [Glycine max] gi|356577055|ref|XP_003556645.1|
Domains
9
Lj0g3v0294479.1
– PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356551773|ref|XP_003544248.1|
Domains
6
Lj1g3v0084960.1
– Calmodulin protein kinase [Medicago truncatula] gi|357480891|ref|XP_003610731.1|
Domains
5
Lj1g3v0084960.2
– Calmodulin protein kinase [Medicago truncatula] gi|357480891|ref|XP_003610731.1|
Domains
5
Lj1g3v0095210.1
– Uncharacterized protein TCM_020641 [Theobroma cacao] gi|508713810|gb|EOY05707.1|
Domains
6
Lj2g3v3337760.1
– PREDICTED: OBERON-like protein-like [Glycine max] gi|356552124|ref|XP_003544420.1|
Domains
10
Lj3g3v3689940.1
– PREDICTED: protein OBERON 4-like [Glycine max] gi|356544293|ref|XP_003540588.1|
Domains
11
Lj4g3v2120360.1
– PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356562279|ref|XP_003549399.1|
Domains
14
Lj4g3v2409500.1
– PREDICTED: protein OBERON 3-like [Glycine max] gi|356512285|ref|XP_003524851.1|
Domains
11
Lj4g3v3093980.1
– PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356527799|ref|XP_003532494.1|
Domains
13
Lj5g3v2045980.1
– Uncharacterized protein TCM_020641 [Theobroma cacao] gi|508713810|gb|EOY05707.1|
Domains
6
LotjaGi1g1v0008900.1
– Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|A0A151S028|A0A151S028_CAJCA Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi1g1v0008900
Domains
14
LotjaGi1g1v0008900.2
– Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|A0A151S028|A0A151S028_CAJCA Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi1g1v0008900
Domains
14
LotjaGi1g1v0136700.1
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.2 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MB08|I1MB08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0136700
Domains
6
LotjaGi2g1v0004800.1
– Protein OBERON 3; TAIR: AT1G14740.1 class I heat shock protein, putative (DUF1423); Swiss-Prot: sp|Q94B71|OBE3_ARATH Protein OBERON 3; TrEMBL-Plants: tr|I1K3D1|I1K3D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0004800
Domains
11
LotjaGi2g1v0212600.1
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600
Domains
13
LotjaGi2g1v0212600.2
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600
Domains
14
LotjaGi2g1v0212600.3
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600
Domains
14
LotjaGi2g1v0212600.4
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600
Domains
14
LotjaGi2g1v0455000.1
– Protein OBERON 1; TAIR: AT1G05410.1 CDPK adapter, putative (DUF1423); Swiss-Prot: sp|Q9S736|OBE1_ARATH Protein OBERON 1; TrEMBL-Plants: tr|A0A1J7H3L6|A0A1J7H3L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455000
Domains
6
LotjaGi2g1v0455000.2
– Protein OBERON 1; TAIR: AT1G05410.1 CDPK adapter, putative (DUF1423); Swiss-Prot: sp|Q9S736|OBE1_ARATH Protein OBERON 1; TrEMBL-Plants: tr|A0A1J7H3L6|A0A1J7H3L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455000
Domains
6
LotjaGi3g1v0549900.1
– Oberon-like protein; TAIR: AT3G63500.2 fibronectin type III domain protein (DUF1423); Swiss-Prot: sp|Q84TI3|OBE4_ARATH Protein OBERON 4; TrEMBL-Plants: tr|V7AD13|V7AD13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0549900
Domains
11
LotjaGi4g1v0302100.1
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.3 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100
Domains
15
LotjaGi4g1v0302100.2
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.1 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100
Domains
15
LotjaGi4g1v0357900.1
– Protein OBERON 3; TAIR: AT1G14740.1 class I heat shock protein, putative (DUF1423); Swiss-Prot: sp|Q94B71|OBE3_ARATH Protein OBERON 3; TrEMBL-Plants: tr|I1K3D1|I1K3D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357900
Domains
11
LotjaGi4g1v0451000.1
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000
Domains
14
LotjaGi4g1v0451000.2
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000
Domains
14
LotjaGi4g1v0451000.3
– Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000
Domains
14
LotjaGi5g1v0313000.1
– Protein OBERON 1; TAIR: AT1G05410.1 CDPK adapter, putative (DUF1423); Swiss-Prot: sp|Q9S736|OBE1_ARATH Protein OBERON 1; TrEMBL-Plants: tr|A0A1J7H3L6|A0A1J7H3L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0313000
Domains
6
LotjaGi6g1v0023200.1
– Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|V7BM29|V7BM29_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0023200
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 3.03