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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0223800 |
| Transcript ID | LotjaGi4g1v0223800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|P34922|G3PC_PEA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; TrEMBL-Plants: tr|I3SYQ7|I3SYQ7_LOTJA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi4g1v0223800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52933189..52936099) extracted from Lotus japonicus Gifu genome v1.2.
TGTTTGAGATCAGGCAAGATCAAGATCGGAATTAACGGTAAATATTCTTCATCCTTCGATCTATGTTCTTCTCTGGCTAG ATCGGATCTATGATCTATCGTGTTGTATTACTGTTTGGAATTTCGTTTTTGTTGAATATTGTTTGGTTTGCTCACAGGAT TCGGAAGGATCGGGCGTTTGGTGGCCAGAGTTGCTCTTACCAGAGACGATGTTGAACTTGTTGCTGTTAACGATCCATTC ATCACCACCGATTACATGGTACAAAACTCTTACTGAATTTTTCCGATCGGATTTTGGTTTAACGTGATTTTGTAGATCTG ATTCGTGTTTGTTTTTGTGTTTTGTGTGCAGACATACATGTTTAAGTATGACAGTGTTCACGGTCCATGGAAGCACCACG AGGTCACTGTCAAGGACGCTAACACCCTTCTCTTTGGTGATAAGCCAGTCACTGTATTTGCAAACAGGTATTGTTTCCAA TCTCAGATTGCTATGCATGTTATTATTTAATTTAATTTTTTTTTTAGTTAGATTTTAGTTCATTTGAAAATTACCTGTGT AATTGTTGAAGGTGTGGTATGTGGAAATTAAGTCTTGTTATGTTATTATTATTGATTTATTGATGCATTATGGGTTGGTT TAATTGATCCCTAAACTATGTGCGGAGATCCCAATGTTATTGATGTTTGTTTTTTTTAATCTGAAAGTACGGTGTTAGGC TTTAGTTTCATTCGATAATTACCTGTGAAGTTGTTTGTGTCCAAGGTGCGTTGTGTGGAAATGAATGGTTGATTGTTGTT ATTGTTGAATCATATTTATACAACATTGGCTTTAACTATCCTGTATACTATGTGCTTCAGGAACCCAGAGGAGATCCCAT GGGGTCAGACCGGAGCTGATATTGTTGTGGAGTCCACTGGAGTTTTCACTGACAAGGACAAGGCTGCTGCCCATTTGAAG GTTTGAATATCCGTGGCTTGCATTTTCTGTTGTTTAATTTTCTGTTAAGACTCATGACAATTCCTTAATTAGTGCTTATA CATGTATATGCTTGTTATTAAGTGGTCTGTTTTCATGTAGTTTGGTCTGATTGCGACATATTGCTTGAACTTGCCTATAC TTCATAGATTTGTTGCTTTCATGCATGATGCATCTCACTTTTTTTTTTCCGAAAACAGCCATGTGATTTATCAGGTCTAT GTAGTTACTCGTTTGTGAAGTCTTAAGCTTTTTAACCAACTTTGAATTCAGTTCTAGTTAGCTACCGGCCTTCCACATCT GAAGTTATATCTAATTGTTTGTAAATGGTATCGAAAAACTTTGTCATTCTTTTTAACTAACTTTGGTTTGATTGATACAG GGTGGTGCCAAGAAGGTTATTATCTCTGCCCCCAGCAAAGATGCTCCCATGTTTGTTGTAGGTGTTAACGAGCATGAGTA CAAGCCAGAGCTTAACATCATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCCCTTGCCAAGGTTTCCTTTCTTA CCTTGCTGATATTTGTTACTCGGATTTTAGTTCTGCTTTGGCTGCTTGATGTCTTACATTTAGCTTATCATTTTTGTAGG TTATTAATGACAGATTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGGTGGGTTTATTACTAGTTAG TTACGATTGCATTTCTTATCTCATGGCTTGCTAATTCATGTTTCCCATGCTGTTGTGCAAATCAGCCACTCAGAAGACTG TTGATGGGCCATCCGCAAAAGACTGGAGAGGTGGAAGGGCTGCCTCATTCAACATCATTCCCAGCAGCACTGGAGCTGCT AAGGTGAGATGTTTGGCACCACATGTGGTGTTTCACATCACACTCTTTACCAGCAACCTTTTGTTGTTCATAGTCACTGT TATCTGATGTTTTATTTCATTTTTTCTTTCTCAAGGCTGTTGGCAAAGTGCTTCCTGCTTTGAATGGAAAATTGACCGGG ATGGCATTCCGTGTTCCTACTGTGGATGTCTCAGTTGTTGACCTCACAGTCAGACTGGAGAAGGCTGCCACCTATGATCA AATTAAAGCTGCTATCAAGTAAGGGCACAATGCATGTGTTCTCCTCTTGGAGTTGTGTTTCAGAAGCACTTAATTTGAAC TATAGTTTATGAGGACTTAAATGTTCTATTATGATATCTGCAAAGATGGCTGCATTATTTCTCCCTAATCCCCTTTCATC TGGTTTGCAATATAGTTAATATTTGTGTCTTTGACAGGGAGGAGTCTGAGGGCAAATTGAAGGGAATCCTCGGTTACACT GAAGATGATGTGGTCTCAACTGACTTCATTGGCGACAACAGGTAAACGTTCTTACTTCTTAGCAGCAGCTTACAAGTTGT TAATTACAGGTTGCTACTGATGGTGTCTATCCTAAATTTCATTATCAAGTGGTTTAGATACAATACTAAAAATGCTTTAT GCTTTCGACAAAAGGAATGGACTCCCTTTTATGTATTTGAGTCGGTAATTATTATTCACTGATTTCGTAATTAATATTTC AGGTCAAGTATCTTTGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTCAAGCTTGTCTCGTGGTATGACAACGA GATGGGATACAGGTAATCAACATCATACTATTTTTCTTTAATATTTTTTCCTTCGGATGATTGTTCTTTTCGTGTTGATT TCAAAAAGTAGTGGAATCCATGGTGGTTTCTTTTCCACCATAGTTTATTCCCAGTTGGTTGCTAAAAGTAGTGGAATCCA CCTAGTTATGAAGTTGCTTTGCTTTTGATTAAGTTTTCTAATTCCTCGTTTCTGTTGTTTTGCAGCACCCGTGTGGTTGA CCTGATCGTGCATGTTGCAAAATCTCTTTAA
CDS sequence (LotjaGi4g1v0223800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATACATGTTTAAGTATGACAGTGTTCACGGTCCATGGAAGCACCACGAGGTCACTGTCAAGGACGCTAACACCCT TCTCTTTGGTGATAAGCCAGTCACTGTATTTGCAAACAGGAACCCAGAGGAGATCCCATGGGGTCAGACCGGAGCTGATA TTGTTGTGGAGTCCACTGGAGTTTTCACTGACAAGGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCCAAGAAGGTTATT ATCTCTGCCCCCAGCAAAGATGCTCCCATGTTTGTTGTAGGTGTTAACGAGCATGAGTACAAGCCAGAGCTTAACATCAT TTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCCCTTGCCAAGGTTATTAATGACAGATTTGGCATTGTTGAGGGTT TGATGACCACTGTTCATTCCATCACTGCCACTCAGAAGACTGTTGATGGGCCATCCGCAAAAGACTGGAGAGGTGGAAGG GCTGCCTCATTCAACATCATTCCCAGCAGCACTGGAGCTGCTAAGGCTGTTGGCAAAGTGCTTCCTGCTTTGAATGGAAA ATTGACCGGGATGGCATTCCGTGTTCCTACTGTGGATGTCTCAGTTGTTGACCTCACAGTCAGACTGGAGAAGGCTGCCA CCTATGATCAAATTAAAGCTGCTATCAAGGAGGAGTCTGAGGGCAAATTGAAGGGAATCCTCGGTTACACTGAAGATGAT GTGGTCTCAACTGACTTCATTGGCGACAACAGGTCAAGTATCTTTGATGCCAAGGCTGGAATTGCTTTGAATGACAACTT TGTCAAGCTTGTCTCGTGGTATGACAACGAGATGGGATACAGCACCCGTGTGGTTGACCTGATCGTGCATGTTGCAAAAT CTCTTTAA
Protein sequence (LotjaGi4g1v0223800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTYMFKYDSVHGPWKHHEVTVKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVESTGVFTDKDKAAAHLKGGAKKVI ISAPSKDAPMFVVGVNEHEYKPELNIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGR AASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDD VVSTDFIGDNRSSIFDAKAGIALNDNFVKLVSWYDNEMGYSTRVVDLIVHVAKSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 128 | 128 | 9.73E-48 | ||
| Pfam | 1 | 65 | 65 | 6.0E-17 | ||
| SMART | 1 | 112 | 112 | 6.6E-53 | ||
| Gene3D | 1 | 288 | 288 | 1.2E-140 | – | |
| PANTHER | 1 | 294 | 294 | 9.9E-192 | – | |
| PANTHER | 1 | 294 | 294 | 9.9E-192 | ||
| PIRSF | 1 | 295 | 295 | 4.6E-111 | ||
| TIGRFAM | 2 | 286 | 285 | 1.2E-121 | ||
| PRINTS | 71 | 84 | 14 | 3.6E-50 | ||
| PRINTS | 106 | 124 | 19 | 3.6E-50 | ||
| ProSitePatterns | 110 | 117 | 8 | - | ||
| Gene3D | 111 | 276 | 166 | 1.2E-140 | – | |
| SUPERFAMILY | 111 | 274 | 164 | 1.52E-81 | – | |
| Pfam | 117 | 274 | 158 | 5.9E-72 | ||
| PRINTS | 133 | 149 | 17 | 3.6E-50 | ||
| PRINTS | 190 | 207 | 18 | 3.6E-50 | ||
| PRINTS | 230 | 245 | 16 | 3.6E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Glucose metabolic process | The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. | ||
| Molecular function | Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP. | ||
| Molecular function | NADP binding | Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0223800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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