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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0012400 |
| Transcript ID | LotjaGi3g1v0012400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); TAIR: AT5G25460.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|P32167|YIIX_ECOLI Uncharacterized protein YiiX; TrEMBL-Plants: tr|A0A0S3SFC0|A0A0S3SFC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1336006..1337498) extracted from Lotus japonicus Gifu genome v1.2.
TCACGTGGCTTAGTCAGTTTTTCATGTGCTCATAGCTTGCACTAACATGATACTGATCACATACTCACATGGGAACAAGA CCAAAAAGTGGTCTTGAGAAAGAAACTACAACTAGTTCATTTAAATTCGTAGAAAACAGAGTAATGAACTCAGCAAGTGC TTGCAAATTTTTTCAGGTCCATTGCCAAATGGTGGCTTCGAGAAAGGGCCAAAACCAGTCCAATTGAAAGGGTCAGTGGT GACCGGGAAGGATGCAATTCCGGATTGGACAACTTCAGGGTTCGTCGAATACATAAAGTCAGGGCAACAACAAGGCGACA TGTTGCTAGTGGTGCCCGAGGGCAAATACGCGGTTAGACTTGGCAACGAAGCTTCCATTAAGCAGAAGGTTAGACCATAT ATATATATGTTATATTTTTAATATGTCATCGTCAACTTAAGCAGAGGTCTTAGATTCGATCATTAATATTTAATATTGTA TTTTTAACAGGTGAAGTTGGCTAAGGGGTTGTTCTACTCGATCACGTTCAGCGCGGCCCGCACATGCGCGCAGGAGGAGA AGCTGAACGTGTCGGTGGTGCCAACCAATGAGAAGAAGGATTGGGGAATCATCCCCATTCAAACAATGTATGGTAGCAAT GGTTGGGAATCATTTGCTTGTGGGTTTAGAGCAGATTATCCAGAAGGAGAAATTGTGATCCATAACCCTGGTGTTGAAGA GGATCCAGCTTGTGGCCCACTTATTGATTCTGTTGCCTTGAAGGTTTTGAACCCACCCAGAAGAACCAGAGGTGAATTGA GTTCTTCTTTCTCTGGGCTCTTCTGACTATGATTTTGACTTCAATGTGATTTTCGAATGAGTTTCCAAATATGCACTTTT TTTTTATAGCTGAATTACCATTTTGGGACACACATAAAGTTGACTAAATTTGGTATTTTACATTGTTGATGCAGACAATT TGCTTAAAAATGGGAACTTTGAAGAAGGTCCTTATATGTCTCCTCGTGAGTCTTGGGGGGTTTTGATCCCACCCCACGCT GAGGACAGTCATGGTCCTTTACCAGGATGGATAGTTGAGTCTCTGAAGGCTGTGAAGTATGTTGATTCTGACCACTTTGC TGTGCCTGAGGGAAAAAGAGCAATTGAGCTTGTTGCAGGAAAAGAAAGTGCTATTGCACAAGTTGTGATCACTTACATTG GCAAGGTTTATGACCTCACATTCTCTGTTGGTGATGCCAACAATGCATGTGAAGGTTCCATGGTGGTAGAAGCATTTGCT GGTCAAGACACTGTCCAAGTTCCTTATCAATCTAAGGGCAAAGGAGGGTCTGTTACAGGGAAACTAAGGTTTAAGGCTGT GACAGAACGAACTCGCATCAGGTTCCTAAGCACATTTTACACCATGAAGAATGATAACTCTGGTTCTCTTTGTGGACCTG TTATTGATGATGTCAAATTGCTCAGTGTTCGCTATCCTAACAAACACCCTTGA
CDS sequence (LotjaGi3g1v0012400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCTAGTGGTGCCCGAGGGCAAATACGCGGTTAGACTTGGCAACGAAGCTTCCATTAAGCAGAAGGTGAAGTTGGC TAAGGGGTTGTTCTACTCGATCACGTTCAGCGCGGCCCGCACATGCGCGCAGGAGGAGAAGCTGAACGTGTCGGTGGTGC CAACCAATGAGAAGAAGGATTGGGGAATCATCCCCATTCAAACAATGTATGGTAGCAATGGTTGGGAATCATTTGCTTGT GGGTTTAGAGCAGATTATCCAGAAGGAGAAATTGTGATCCATAACCCTGGTGTTGAAGAGGATCCAGCTTGTGGCCCACT TATTGATTCTGTTGCCTTGAAGGTTTTGAACCCACCCAGAAGAACCAGAGGATGGATAGTTGAGTCTCTGAAGGCTGTGA AGTATGTTGATTCTGACCACTTTGCTGTGCCTGAGGGAAAAAGAGCAATTGAGCTTGTTGCAGGAAAAGAAAGTGCTATT GCACAAGTTGTGATCACTTACATTGGCAAGGTTTATGACCTCACATTCTCTGTTGGTGATGCCAACAATGCATGTGAAGG TTCCATGGTGGTAGAAGCATTTGCTGGTCAAGACACTGTCCAAGTTCCTTATCAATCTAAGGGCAAAGGAGGGTCTGTTA CAGGGAAACTAAGGTTTAAGGCTGTGACAGAACGAACTCGCATCAGGTTCCTAAGCACATTTTACACCATGAAGAATGAT AACTCTGGTTCTCTTTGTGGACCTGTTATTGATGATGTCAAATTGCTCAGTGTTCGCTATCCTAACAAACACCCTTGA
Protein sequence (LotjaGi3g1v0012400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLVVPEGKYAVRLGNEASIKQKVKLAKGLFYSITFSAARTCAQEEKLNVSVVPTNEKKDWGIIPIQTMYGSNGWESFAC GFRADYPEGEIVIHNPGVEEDPACGPLIDSVALKVLNPPRRTRGWIVESLKAVKYVDSDHFAVPEGKRAIELVAGKESAI AQVVITYIGKVYDLTFSVGDANNACEGSMVVEAFAGQDTVQVPYQSKGKGGSVTGKLRFKAVTERTRIRFLSTFYTMKND NSGSLCGPVIDDVKLLSVRYPNKHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 123 | 123 | 1.2E-146 | – | |
| PANTHER | 1 | 123 | 123 | 1.2E-146 | – | |
| Pfam | 1 | 114 | 114 | 1.4E-40 | ||
| PANTHER | 124 | 263 | 140 | 1.2E-146 | – | |
| PANTHER | 124 | 263 | 140 | 1.2E-146 | – | |
| Pfam | 124 | 255 | 132 | 6.7E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0012400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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