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IPR010003 is a HARP domain.
<p>SMARCAL1 (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A-like1), also known as DNA-dependent ATPase A and HARP (Hep-A-related proteins), maintains genome integrity during DNA replication. SMARCAL1 has ATP-dependent annealing helicase activity, which helps to stabilise stalled replication forks and facilitate DNA repair during replication. Biochemically, SMARCAL1 can bind to DNA that contains single- and double-stranded regions such as forks and DNA hairpins. DNA binding activates its ATPase activity, and this activity promotes DNA single-stranded annealing [[cite:PUB00060501], [cite:PUB00060502]].</p> <p>SMARCAL1 is a multifunctional protein. The ATPase domain, which lies in the C- terminal half of the protein, is split into two regions of primary amino acid sequence by a 115-amino-acid linker sequence. The N-terminal half of the protein contains a highly sequence conserved ssDNA-binding protein replication protein A (RPA)-binding domain, and one or two HARP domain(s). The evolutionarily conserved HARP domain determines the annealing helicase activity required for the in vivo and in vitro functions of SMARCAL1 [[cite:PUB00060501], [cite:PUB00060502], [cite:PUB00013154]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Chromatin remodeling 1; TAIR: AT1G48310.1 chromatin remodeling factor18; Swiss-Prot: sp|Q9NZC9|SMAL1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1; TrEMBL-Plants: tr|K7LZ63|K7LZ63_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0316600 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 100.00 |