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IPR011033 is a PRC-barrel-like superfamily.
<p>The PRC-barrel is an all β-barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain, which play an essential role in archaeal FtsZ-based cell division [[cite:PUB00010437], [cite:PUB00153712]]. These proteins have been renamed as CdpB1 and CdpB2 [[cite:PUB00153712]].</p> <p>This superfamily identifies the PRC-barrel domain and related domains, including the CKK domain, which is found at the C terminus of calmodulin-regulated spectrin-associated (or CAMSAP) proteins.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508712527|gb|EOY04424.1| | 5 | ||
| – | PRC-barrel-like protein; TAIR: AT2G38570.1 hypothetical protein; Swiss-Prot: sp|Q64929|VP4_AHSV4 Core protein VP4; TrEMBL-Plants: tr|A0A151U131|A0A151U131_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0457900 | 5 | ||
| – | Ribosome maturation factor rimM; TAIR: AT5G46420.1 16S rRNA processing protein RimM family; Swiss-Prot: sp|A5GI62|RIMM_SYNPW Ribosome maturation factor RimM; TrEMBL-Plants: tr|G7L811|G7L811_MEDTR 16S rRNA processing protein RimM; Found in the gene: LotjaGi4g1v0383200 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 33.33 |