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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0383200 |
| Transcript ID | LotjaGi4g1v0383200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome maturation factor rimM; TAIR: AT5G46420.1 16S rRNA processing protein RimM family; Swiss-Prot: sp|A5GI62|RIMM_SYNPW Ribosome maturation factor RimM; TrEMBL-Plants: tr|G7L811|G7L811_MEDTR 16S rRNA processing protein RimM; Found in the gene: LotjaGi4g1v0383200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76176456..76182704) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGATTTTTTTTCTTTGAAATGGTGTTTGATTCCTTAAGCAATGTCTTTTGAGTTTTATGGATGGAAAAAATATTATC GGCTCGAGTATAACTTACGAAAAAAATCAATAAGCATTTATTGATTATATTTCAAACAGATAATCCACGACGAGGAACTG CTGCAATAGAACCCAGAAATGCAAATACACAAACTGCACTGAGCACACACAGAGAAGCATTCAAAGAAGATGCAGATTCA GCCACCGCCACCACCCTCTCAACGCACCTTCCACCACCACCACCACCACCACCCTCTTCTTCCTCTTCCATCTTCTTCCC TCGGAATCAATTGCAATTTCTCTTTCAAACCTTTTTTCCTAACTCCAACCAAACACCTCCCTATTCTTCCTCTGCACTCC CAATCTCACACCACTGGTACTACCACTACAAACTCAGCAACATCTCACATGCTTTCAATTCAACTTCATATTATTCTCAC AGTTTTTGATTTTTGCAGTTGCTTCAGCTACATCAGCAGCTACCGATGAGTCTGTTTTGGACAGTGTCAGTGAGGGAAAC AAGGAATTAGGGTTCGTTGATGTTGGCTATGTAGCTGGTGTTCACGGTGTTCAAGGCGAGATTCGTGTCAAGCCGGTTAC CGATTTTCCCCAACTACGATTTTCCACTGTACAATGATTCAATTTAGTCTCTTAGTTTCTTTTTCTAACTGTTTTGTTTT GTTTTGTTTTGTATTTTAATGTTGGAGGGTGGTTTTGTTTGATTTACTAGCCTGGGAAAAGATGGTTGAAGCACAAGGCT TTGGGTGGAGAAACCGTTCGACAAATTGAGCTCGAAGAAGGTAGGGAGCATCCTGGCCAGAAGTGCTGGATAGTCAGATT CAAAGGAGTTCATACAGTGGAGCAGGTAAATAAATGCGACGAACCAACTCATTAAATGCTAGTTGTAGCAAGACACTATC TAATGTATCAAGAACACAATTCAAAGTAGTTGAAATATATCATATGAATAATGTATAATGCTTGATGTAGTAGTTTTTAA TCAGGATTGGACAAAACGACTCAGGCTATGTTTAGATATCCGTTGTCACGTGTGTAAACATATGTTAGCACTTACTTCGA GGCAAAAAATGTATAGAATTCTTCCTATGGATTGAGATGTAAGTTCATTCACGTTGCAATCAGCTAATATCCAGACACAC TTAAACATAAGTCACACAAACAAAATCTAAAGTATATATCACAAGTCAAAATTAAAATAGGGTGAAGGTATTGGCGTATA GGAAACTAAGGTGTGCATAGAGTAGGTAAATAATCGGGTGAAGCCTCTATGAGCAAGTGATTGTGGCTATGTGAAGTCCT TATTTAGAAGAATGAAAATTGAAAATAGAGAAATGGAATAATTAAATAAGGTGTATCCAATAGTGCTTCTTTAGTTTCTT TTTGCTTAACAATTTAAGCTTATTTGATAGGACATTATGGAATTGTTTGCTATATGTAGCCAACTCCATTTGATGGAAAA GGGCTTTGGCTGTTGTTGACTTTAAAATGTCTTTTACGATAATTGGTAAAATAAAAAGAGCAAGAAAAGAAAATTATTGA ATCATGCGATTTAATAACTATGCATGCAGGCTAAGTTGCTTGTTGGTTCCACCTTGGTTGTGACGGAAGAAGACAGGCCA GAACTAGAGGAGGGTGAATTTTACACACATGATCTAATTGGGATGAGTGTTTTCATTAAGGTTTGCACTAATCAATATTC TAGTGTGTGCATTTGTATGTAAGAAGACAAATCTCTTTCTCCTCTCCTTATTCATTATGTAGACTTGTTATTGAGTATCA CCTGTTACTCAAACTAGATTATCCGTCTTTTCTTGATCAGCTGTTTTTCTATTGTATTTTTTAGGCCTGTTATGATTTGG TGATTCTTACTGTCGAGCTATCACAACAGAAGTGTCAACTGCTTTCCATATTAATGCATAACCTTTCAATGAACAAGATT CATCCTTTTTGTTATTGAATTTGTTCTAGATACATATCTGCCTGCTACCTGTTCATGTGTACCAACAATTCAGCTGGTGA AATGTTACTATTTTGACTTTTATGAAAGGCTGCTATTATCAATAACCTAGTGATATATATATATATATATCTATATATAT ATATACATACATACATGCACATATATATATATATATTGTCACCTTATTGTTAGTTTTTTTTCTTTCTTAAAATGTAATAC TTTAAGGTGTTGACCATGCTTCTTCGTATCAGGAAAATGGAAAACTTTTGGGAACTGTTATTAATGTTTTCAATAGTGGA GCCAATGATCTGCTACAAATTTCACTTGATTCATCTTTTGATATGCTTGATGAAAGTGGCGCAAGGTCAGCACAAATACA AGCATCTGATCAGCTTGTTTTGGTACCTTTTGTTGAAGCAATTGTTCCAGATGTTGATATGAAAAGAAGAGAGATGCATA TTACCCCGCCCAAGGGACTCCTGGAAGTAAACTTACGATTTGATGAACGATCCAAAAAAGAAAGGCGCCAACTTGTGAGC CATACTTATCTGTTACTTTTAGGGCAATCATCTATCATTTAGATATAATTTTATTACTTCTTTTCCCCATTTGCATGAAA ACCATGCTCACAGATTCACGTTGCCAGCCCGAATGGAATTAGACTTTCATAATATGGCATTCTGTTGTCCATCCTAACCT AATAGTTGTACTTATATAAATTGCGTTCTAAGTTGCCTTTTATGGATTATTTTCTCTGTTATGATTGGAACTGATACTTT ATTAGTTTTTGATAATTCCCTGGCATATTTCAGGAATGGAAAGAAAGGAAAAAGTTTCAAAAGCGACTCATAGCAGCCAA AAAGAAGCTCAGTGAGATGGAGCAACAACATGTATTTCATGGATATGGATCTGGAGAGAAAGAACAGTGGAGCTTGCTTA GTAATCAGATTGTTGGTGTAAACTCCAAATTGCTTCTGGAGGCTTTACAAAGTCTTGAAAAACCAGCTAAGAGGTAAGTT AATGAAACAACAAACAAAGCCTTTTCCCACCAGACAGGGTTGGCTACATGAATCAAATGAAGTCATTGTGTTCTAATCCA AAACTAACTCTTTACCAATGCCATTTAATTTAGATCTTTTTAGTGGTTTTATGTAGAGTCTTTAATTGGTCTATAATATG ATACAGCTGGTTCAGACACCATTGATTTTATTGAAGAAAAGAAGGAACTCTGCAACCATACAAGTCTCCCAAAACATTTG AGAGGTCCTAGAATCTTCTAAATCTTTCTGATTACTAATTGATCAAAGACCCCTCTGCCACCAACATGCCTAATTCACTG ACTAACTAACTACCATTCTGTTGGATACTAACTAACTATACCTCTAATTATCGGACTATGATACTCCATTTGATCAAATT TTCTAACTGGAGACTCTACTAGTCTTCTTAAAACCATCTTAGGTGAAATTCTACCAATTTTCTGCAATTGATGCCACTCC AACTTTCTCTATAATGTGAACCAGGGTTATTAAGTTCCGACACCCTTTCCCCACCCCTGTAAAAAGGAAAAAAAAGCAAT GTTCTTTTGTGGTTAATATCTGACATAATGTTGTCATTTTATACATTTTATTCAATTCATATTCAAAGGTAGTTGATGTA CTAGGTTTAGGACATGTCTATCATCCCTAACTATGCTAAACTGTTAAATGATAGGAATTAGGATTTAGGACATGTTAACA TCTTATTTAATTATTCTCTTTTTTGAACTTTTCCTCACTGCCATTATTTTTTTATGACTTTAATGTCACCACTTCTCAGC CCTTTATATTGAGAAAGGAAAATTTCCTTTTATTCATCTCTTATTTCATTTAACTTTTTTAAATCAGATGGAATGCACCT GAGTTGTCCAGTGCCGTAGAAGCAAAGCTACAAATATCAGAGGAATCTTTCTTAACTGGAAGCAAAGACAAGTTGGTTAG ACATATCAAAAAGGAAGAGAAGGGACTTAAGCTATTATCTGAGGGAAAAATGGCTATTGTCTTGCTCTTGCATGAGAAAG AGAATCATGGGTGTGTTTCGGACCCTCACATTGATCAGAATGAAGCAACTGACAATTCATCACTACACGTGCTTCAAAAG TTACTCAGTGATCATGAAAAAATTGTAAAGGTTGTATATTTTGTGTATTATTTACTTATGTATTTTTGGTAAATAATCTT ATAAAAATTCATGGTTGTGAAAATCTAGTTGTTCCATTCGATAGATGTTTTTATAATTGAATTTCAACAGAACAATAATC AGTGCCTTTTAGGAGTTATCATGCAAGATATACTAAATAGCCTTTCTTCATCTAATGGGTTTCCATTTTCGCAGGTCAAA GATCGTGCCTCAGTGCCTTTGATTTTGGTTTCCTCAGCTCAACAAATTCAATCTTTAAGAAATCTGTTTACAAGCAATAA TCACTTTGAATTTGACTCTGAAAAGGTTCACATCAAATCAAGGATCTCCTTTTTATTTTGTATTATCTTGTTTAGATATG TATTCAAGTTTGTCACTGGTGTATATCTCTTATTGTATCCTAAATTACATATTCTCAAGTTTCAGATTTTTGTTGTTGAA AGAAAAGGTTCATATAACTTGAGTTTCCAAATTATCCTTCATCTCGAATTCTACTTTACCTTTTAGTATGATCTAAAATG TTTTGTCTTGTCTCATTGTCAATATTGGATTATGTGCATTCAACCATACAGCTGTAGTGGTTTAGTCCAAGGAAGGGTAA AGGATGGCACATTGTTATCTCATTGGTTGGAAACTGAGAATTTGTAGTAATGCTGACCTTTAACTCACTTTCCTTTGAAG ATGTTATATGTACCATAAATAATACTATGCTACACCGGAATGGTGAAGTGGTGGTCCATCTGCAATTCACTTTCAATTTG CACATGTTTAAGTAATTTGCCCTTTCATTTTAAAATGGAGTTCTAGTGCCAAGCTCTTTTCTTGCTTAGATAATTAGCTT TCTGTTTTTAACCCTCTTGCAGGTATGGTTTTTGGAGGAAGAGAAGCTGCCAGTTGTTAGCAGTTTGCTGGAAGGGCAAA ACAAATACAAGATTTTAATGAAGTCACCTTGGGAAATACTCGAATCTCCTGTTGGATCAGGAGGGTTGATTAGTTTGTTT TCAAAACATGGCATTGCAGATGATCTTATGAACATGGGTGTTGAATACATTGAGGTTAGATTACTGTTTTCCTTTACACC ATACATTGAAATTGATGCCTGATTATCTATTTACTTGTTTAGCTGCAACCCGCAACTACAAAGGGAGGAGGGCAATGAAC TTTTTGTGAGGTTTTAATTGCTGATTCATTTGTGTTCTACATTCTTGCAGTTATGCTGCCCAAATGAAAGAATTTCTGGT GGAAACTCACTACTGCTTGGGTTGGTTAGTTCACGGACAGCCAAAATTGGGATACAAATTTCACCTACAATAGCTGATCT AGATGAAAATTTTGACATGATATTATCGATGGATTTTGTAAAGAAGTTAACGAAGCAGAGCAACAAGCTCCAATTTGATG CAACCCCAAAGACAAATTCCTATGTTGAGAAAGTTGATAAAGACTGGGTTACAGTCACCTCTACCACCCCCAACTCATAT GAGCTCTCTTGTAGTATATATAATTCCTTAAACTTATGTTCTTTAGATCAGGTTTGTATGGTGCAGGTTAGAGAGTAATA TGACAAATTGCATTGATTTAGTGATGAAATAGAACTTCAGAATGTATATGATGGAACGAAAGAGCAAAAGCCAAGAAAAA AGGATATGCATATATATGTGGGCTTATCATGTCCCTTTGAAGCTCAGGAATTTTAGATGTGGACATGAGATTCAACAACA TTGCATGAGTGAATATTGCTAGTGGGCTGGATATGAATTTCAGTCATTGATGTGTAACTTTGTTGTAAATTATATAGATA TATATTCTTTTTCATAGTATCTTCCTTCTTGGTAGGTGAAAATTAATTTGCTATGCACACTTTGGTAAAAAAATAAAATC CAATCTAAATATAAAAAAGTTTAGGTTGAGTTATTGGGTGAATTTAGGTCAAACTTGATTCTTGGGGATGAATTGCTCCT ATTGTTGTCTTTGAGGATGAGTCTTCCAATTAATTATGCTGGACTTGGTTTCTTAATAGTTATTTTAGTCCCTCAAAGTT ATAGGATGG
CDS sequence (LotjaGi4g1v0383200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATTCAGCCACCGCCACCACCCTCTCAACGCACCTTCCACCACCACCACCACCACCACCCTCTTCTTCCTCTTCC ATCTTCTTCCCTCGGAATCAATTGCAATTTCTCTTTCAAACCTTTTTTCCTAACTCCAACCAAACACCTCCCTATTCTTC CTCTGCACTCCCAATCTCACACCACTGTTGCTTCAGCTACATCAGCAGCTACCGATGAGTCTGTTTTGGACAGTGTCAGT GAGGGAAACAAGGAATTAGGGTTCGTTGATGTTGGCTATGTAGCTGGTGTTCACGGTGTTCAAGGCGAGATTCGTGTCAA GCCGGTTACCGATTTTCCCCAACTACGATTTTCCACTCCTGGGAAAAGATGGTTGAAGCACAAGGCTTTGGGTGGAGAAA CCGTTCGACAAATTGAGCTCGAAGAAGGTAGGGAGCATCCTGGCCAGAAGTGCTGGATAGTCAGATTCAAAGGAGTTCAT ACAGTGGAGCAGGCTAAGTTGCTTGTTGGTTCCACCTTGGTTGTGACGGAAGAAGACAGGCCAGAACTAGAGGAGGGTGA ATTTTACACACATGATCTAATTGGGATGAGTGTTTTCATTAAGGAAAATGGAAAACTTTTGGGAACTGTTATTAATGTTT TCAATAGTGGAGCCAATGATCTGCTACAAATTTCACTTGATTCATCTTTTGATATGCTTGATGAAAGTGGCGCAAGGTCA GCACAAATACAAGCATCTGATCAGCTTGTTTTGGTACCTTTTGTTGAAGCAATTGTTCCAGATGTTGATATGAAAAGAAG AGAGATGCATATTACCCCGCCCAAGGGACTCCTGGAAGTAAACTTACGATTTGATGAACGATCCAAAAAAGAAAGGCGCC AACTTGAATGGAAAGAAAGGAAAAAGTTTCAAAAGCGACTCATAGCAGCCAAAAAGAAGCTCAGTGAGATGGAGCAACAA CATGTATTTCATGGATATGGATCTGGAGAGAAAGAACAGTGGAGCTTGCTTAGTAATCAGATTGTTGGTGTAAACTCCAA ATTGCTTCTGGAGGCTTTACAAAGTCTTGAAAAACCAGCTAAGAGATGGAATGCACCTGAGTTGTCCAGTGCCGTAGAAG CAAAGCTACAAATATCAGAGGAATCTTTCTTAACTGGAAGCAAAGACAAGTTGGTTAGACATATCAAAAAGGAAGAGAAG GGACTTAAGCTATTATCTGAGGGAAAAATGGCTATTGTCTTGCTCTTGCATGAGAAAGAGAATCATGGGTGTGTTTCGGA CCCTCACATTGATCAGAATGAAGCAACTGACAATTCATCACTACACGTGCTTCAAAAGTTACTCAGTGATCATGAAAAAA TTGTAAAGGTCAAAGATCGTGCCTCAGTGCCTTTGATTTTGGTTTCCTCAGCTCAACAAATTCAATCTTTAAGAAATCTG TTTACAAGCAATAATCACTTTGAATTTGACTCTGAAAAGGTATGGTTTTTGGAGGAAGAGAAGCTGCCAGTTGTTAGCAG TTTGCTGGAAGGGCAAAACAAATACAAGATTTTAATGAAGTCACCTTGGGAAATACTCGAATCTCCTGTTGGATCAGGAG GGTTGATTAGTTTGTTTTCAAAACATGGCATTGCAGATGATCTTATGAACATGGGTGTTGAATACATTGAGTTATGCTGC CCAAATGAAAGAATTTCTGGTGGAAACTCACTACTGCTTGGGTTGGTTAGTTCACGGACAGCCAAAATTGGGATACAAAT TTCACCTACAATAGCTGATCTAGATGAAAATTTTGACATGATATTATCGATGGATTTTGTAAAGAAGTTAACGAAGCAGA GCAACAAGCTCCAATTTGATGCAACCCCAAAGACAAATTCCTATGTTGAGAAAGTTGATAAAGACTGGGTTACAGTCACC TCTACCACCCCCAACTCATATGAGCTCTCTTGTAGTATATATAATTCCTTAAACTTATGTTCTTTAGATCAGGTTTGTAT GGTGCAGGTTAGAGAGTAA
Protein sequence (LotjaGi4g1v0383200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIQPPPPPSQRTFHHHHHHHPLLPLPSSSLGINCNFSFKPFFLTPTKHLPILPLHSQSHTTVASATSAATDESVLDSVS EGNKELGFVDVGYVAGVHGVQGEIRVKPVTDFPQLRFSTPGKRWLKHKALGGETVRQIELEEGREHPGQKCWIVRFKGVH TVEQAKLLVGSTLVVTEEDRPELEEGEFYTHDLIGMSVFIKENGKLLGTVINVFNSGANDLLQISLDSSFDMLDESGARS AQIQASDQLVLVPFVEAIVPDVDMKRREMHITPPKGLLEVNLRFDERSKKERRQLEWKERKKFQKRLIAAKKKLSEMEQQ HVFHGYGSGEKEQWSLLSNQIVGVNSKLLLEALQSLEKPAKRWNAPELSSAVEAKLQISEESFLTGSKDKLVRHIKKEEK GLKLLSEGKMAIVLLLHEKENHGCVSDPHIDQNEATDNSSLHVLQKLLSDHEKIVKVKDRASVPLILVSSAQQIQSLRNL FTSNNHFEFDSEKVWFLEEEKLPVVSSLLEGQNKYKILMKSPWEILESPVGSGGLISLFSKHGIADDLMNMGVEYIELCC PNERISGGNSLLLGLVSSRTAKIGIQISPTIADLDENFDMILSMDFVKKLTKQSNKLQFDATPKTNSYVEKVDKDWVTVT STTPNSYELSCSIYNSLNLCSLDQVCMVQVRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 48 | 672 | 625 | 6.1E-230 | ||
| PANTHER | 48 | 672 | 625 | 6.1E-230 | – | |
| Gene3D | 88 | 182 | 95 | 2.9E-19 | ||
| Hamap | 88 | 277 | 190 | 24.577 | ||
| TIGRFAM | 89 | 277 | 189 | 7.3E-42 | ||
| SUPERFAMILY | 89 | 182 | 94 | 1.17E-15 | ||
| Pfam | 91 | 179 | 89 | 2.8E-19 | ||
| Gene3D | 183 | 283 | 101 | 9.4E-16 | – | |
| Pfam | 185 | 278 | 94 | 8.4E-9 | ||
| SUPERFAMILY | 188 | 277 | 90 | 5.57E-13 | ||
| Coils | 300 | 320 | 21 | - | – | |
| Gene3D | 304 | 600 | 297 | 1.2E-35 | ||
| SUPERFAMILY | 307 | 671 | 365 | 1.35E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Ribosome binding | Interacting selectively and non-covalently with any part of a ribosome. |
Expression pattern of LotjaGi4g1v0383200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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