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IPR013949

Source: InterPro

Description

IPR013949 is a U3 small nucleolar RNA-associated protein 6.

<p>Utp6 is a component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [[cite:PUB00008496]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000462
Biological process Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.
Subterm of
GO:0030515
Molecular function SnoRNA binding Interacting selectively and non-covalently with small nucleolar RNA.
Subterm of

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
Lj4g3v0137720.1
– PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Glycine max] gi|356521999|ref|XP_003529637.1|
Domains
8
LotjaGi4g1v0012600_LC.1
– U3 small nucleolar RNA-associated protein 6 like; TAIR: AT4G28200.1 U3 small nucleolar RNA-associated-like protein; Swiss-Prot: sp|Q9NYH9|UTP6_HUMAN U3 small nucleolar RNA-associated protein 6 homolog; TrEMBL-Plants: tr|A0A1J7GI72|A0A1J7GI72_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0012600_LC
Domains
4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
PTHR23271:SF1 PANTHER 1 50.00