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IPR003107 is a HAT (Half-A-TPR) repeat.
<p>The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing [[cite:PUB00006399]]. The HAT motif has striking structural similarities to HEAT repeats ([interpro:IPR000357]), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats. Some studies have suggested that the HAT repeats may be involved in protein-protein interactions [[cite:PUB00077963], [cite:PUB00077964]]. However, the HAT repeats of Arabidopsis HCF107 protein have been shown to bind RNA [[cite:PUB00077958]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi|502091797|ref|XP_004489637.1| | 5 | ||
| – | PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi|502091797|ref|XP_004489637.1| | 7 | ||
| – | PREDICTED: protein RRP5 homolog [Cicer arietinum] gi|502167476|ref|XP_004514152.1| | 22 | ||
| – | PREDICTED: pre-mRNA-processing factor 6-like [Cicer arietinum] gi|502167664|ref|XP_004514211.1| | 10 | ||
| – | PREDICTED: crooked neck-like protein 1-like isoform X1 [Cicer arietinum] gi|502159770|ref|XP_004511524.1| | 12 | ||
| – | Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508786510|gb|EOY33766.1| | 15 | ||
| – | PREDICTED: crooked neck-like protein 1-like [Glycine max] gi|356539448|ref|XP_003538210.1| | 8 | ||
| – | PREDICTED: pre-mRNA-processing factor 39-like [Cicer arietinum] gi|502110201|ref|XP_004493823.1| | 12 | ||
| – | TPR domain protein [Medicago truncatula] gi|357510173|ref|XP_003625375.1| | 10 | ||
| – | PREDICTED: protein NRDE2 homolog isoform X3 [Cicer arietinum] gi|502173002|ref|XP_004515233.1| | 9 | ||
| – | PREDICTED: protein NRDE2 homolog isoform X3 [Cicer arietinum] gi|502173002|ref|XP_004515233.1| | 8 | ||
| – | PREDICTED: crooked neck-like protein 1-like [Cicer arietinum] gi|502115405|ref|XP_004495196.1| | 8 | ||
| – | PREDICTED: crooked neck-like protein 1-like [Cicer arietinum] gi|502115405|ref|XP_004495196.1| | 12 | ||
| – | PREDICTED: pre-mRNA-processing factor 6-like [Glycine max] gi|356543817|ref|XP_003540356.1| | 17 | ||
| – | PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Glycine max] gi|356521999|ref|XP_003529637.1| | 8 | ||
| – | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1| | 15 | ||
| – | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1| | 14 | ||
| – | Pre-mRNA-processing factor [Medicago truncatula] gi|357519211|ref|XP_003629894.1| | 8 | ||
| – | TPR domain protein [Medicago truncatula] gi|357440919|ref|XP_003590737.1| | 12 | ||
| – | PREDICTED: pre-mRNA-splicing factor SYF1-like [Cicer arietinum] gi|502077677|ref|XP_004485713.1| | 8 | ||
| – | Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0041400 | 12 | ||
| – | Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0041400 | 8 | ||
| – | Pre-mRNA splicing factor, putative; TAIR: AT4G03430.1 pre-mRNA splicing factor-like protein; Swiss-Prot: sp|Q9ZT71|STA1_ARATH Protein STABILIZED1; TrEMBL-Plants: tr|V7BV27|V7BV27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0507900_LC | 10 | ||
| – | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|B0W429|FICD_CULQU Adenosine monophosphate-protein transferase FICD homolog; TrEMBL-Plants: tr|A0A151T5T2|A0A151T5T2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0704100 | 10 | ||
| – | Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400 | 12 | ||
| – | Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|A0A151T5W3|A0A151T5W3_CAJCA Pre-mRNA-processing factor 39; Found in the gene: LotjaGi1g1v0704400 | 11 | ||
| – | Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400 | 12 | ||
| – | Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400 | 12 | ||
| – | Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300 | 12 | ||
| – | Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300 | 12 | ||
| – | Cleavage stimulation factor subunit 3; TAIR: AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GUP1|CTF77_ARATH Cleavage stimulation factor subunit 77; TrEMBL-Plants: tr|V7C004|V7C004_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0090100 | 13 | ||
| – | UPF0614 protein C14orf102 family; TAIR: AT3G17740.1 hypothetical protein; Swiss-Prot: sp|Q9H7Z3|NRDE2_HUMAN Protein NRDE2 homolog; TrEMBL-Plants: tr|A0A151S8I5|A0A151S8I5_CAJCA UPF0614 protein C14orf102 family; Found in the gene: LotjaGi2g1v0186200 | 10 | ||
| – | Pre-mRNA splicing factor-like protein; TAIR: AT4G03430.1 pre-mRNA splicing factor-like protein; Swiss-Prot: sp|Q9ZT71|STA1_ARATH Protein STABILIZED1; TrEMBL-Plants: tr|V7BV27|V7BV27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0443200 | 20 | ||
| – | PsbB mRNA maturation factor; TAIR: AT3G17040.1 high chlorophyll fluorescent 107; Swiss-Prot: sp|Q8RWG2|CF107_ARATH Protein high chlorophyll fluorescent 107; TrEMBL-Plants: tr|G7JNW2|G7JNW2_MEDTR PsbB mRNA maturation factor Mbb1; Found in the gene: LotjaGi4g1v0330900 | 14 | ||
| – | Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|A0A0B2SU39|A0A0B2SU39_GLYSO Pre-mRNA-processing factor 39; Found in the gene: LotjaGi4g1v0383300 | 8 | ||
| – | Squamous cell carcinoma antigen recognized by T-cells 3; TAIR: AT4G24270.2 EMBRYO DEFECTIVE 140; Swiss-Prot: sp|B3DJT0|SART3_DANRE Squamous cell carcinoma antigen recognized by T-cells 3; TrEMBL-Plants: tr|I1LT91|I1LT91_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0035200 | 16 | ||
| – | Polyribonucleotide nucleotidyltransferase; TAIR: AT3G11964.2 RIBOSOMAL RNA PROCESSING 5; Swiss-Prot: sp|F4J8K6|RRP5_ARATH rRNA biogenesis protein RRP5; TrEMBL-Plants: tr|I1JFV5|I1JFV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0113300 | 21 | ||
| – | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095; TrEMBL-Plants: tr|A0A151T122|A0A151T122_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0160600 | 12 | ||
| – | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT2G29670.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095; TrEMBL-Plants: tr|A0A0L9VD14|A0A0L9VD14_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112400 | 15 | ||
| – | Pre-mRNA-splicing factor SYF1; TAIR: AT5G28740.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1; TrEMBL-Plants: tr|K7M1P8|K7M1P8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0338100 | 11 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 2.50 |