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SM00386

Source: SMART

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Associated Lotus transcripts 40

Transcript Name Description Predicted domains Domain count
Lj0g3v0121319.1
– PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi|502091797|ref|XP_004489637.1|
Domains
5
Lj0g3v0173949.1
– PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi|502091797|ref|XP_004489637.1|
Domains
7
Lj0g3v0198159.1
– PREDICTED: protein RRP5 homolog [Cicer arietinum] gi|502167476|ref|XP_004514152.1|
Domains
22
Lj0g3v0332639.1
– PREDICTED: pre-mRNA-processing factor 6-like [Cicer arietinum] gi|502167664|ref|XP_004514211.1|
Domains
10
Lj0g3v0340859.1
– PREDICTED: crooked neck-like protein 1-like isoform X1 [Cicer arietinum] gi|502159770|ref|XP_004511524.1|
Domains
12
Lj0g3v0360359.1
– Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508786510|gb|EOY33766.1|
Domains
15
Lj1g3v4301160.1
– PREDICTED: crooked neck-like protein 1-like [Glycine max] gi|356539448|ref|XP_003538210.1|
Domains
8
Lj1g3v4517300.1
– PREDICTED: pre-mRNA-processing factor 39-like [Cicer arietinum] gi|502110201|ref|XP_004493823.1|
Domains
12
Lj1g3v4518320.1
– TPR domain protein [Medicago truncatula] gi|357510173|ref|XP_003625375.1|
Domains
10
Lj2g3v0633870.1
– PREDICTED: protein NRDE2 homolog isoform X3 [Cicer arietinum] gi|502173002|ref|XP_004515233.1|
Domains
9
Lj2g3v0633870.2
– PREDICTED: protein NRDE2 homolog isoform X3 [Cicer arietinum] gi|502173002|ref|XP_004515233.1|
Domains
8
Lj2g3v3106340.1
– PREDICTED: crooked neck-like protein 1-like [Cicer arietinum] gi|502115405|ref|XP_004495196.1|
Domains
8
Lj2g3v3106340.2
– PREDICTED: crooked neck-like protein 1-like [Cicer arietinum] gi|502115405|ref|XP_004495196.1|
Domains
12
Lj3g3v2807960.1
– PREDICTED: pre-mRNA-processing factor 6-like [Glycine max] gi|356543817|ref|XP_003540356.1|
Domains
17
Lj4g3v0137720.1
– PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Glycine max] gi|356521999|ref|XP_003529637.1|
Domains
8
Lj4g3v2267380.1
– PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1|
Domains
15
Lj4g3v2267380.2
– PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1|
Domains
14
Lj4g3v2629890.1
– Pre-mRNA-processing factor [Medicago truncatula] gi|357519211|ref|XP_003629894.1|
Domains
8
Lj5g3v0942160.1
– TPR domain protein [Medicago truncatula] gi|357440919|ref|XP_003590737.1|
Domains
12
Lj6g3v2080270.1
– PREDICTED: pre-mRNA-splicing factor SYF1-like [Cicer arietinum] gi|502077677|ref|XP_004485713.1|
Domains
8
LotjaGi1g1v0041400.1
– Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0041400
Domains
12
LotjaGi1g1v0041400.2
– Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0041400
Domains
8
LotjaGi1g1v0507900_LC.1
– Pre-mRNA splicing factor, putative; TAIR: AT4G03430.1 pre-mRNA splicing factor-like protein; Swiss-Prot: sp|Q9ZT71|STA1_ARATH Protein STABILIZED1; TrEMBL-Plants: tr|V7BV27|V7BV27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0507900_LC
Domains
10
LotjaGi1g1v0704100.1
– Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|B0W429|FICD_CULQU Adenosine monophosphate-protein transferase FICD homolog; TrEMBL-Plants: tr|A0A151T5T2|A0A151T5T2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0704100
Domains
10
LotjaGi1g1v0704400.1
– Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400
Domains
12
LotjaGi1g1v0704400.3
– Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|A0A151T5W3|A0A151T5W3_CAJCA Pre-mRNA-processing factor 39; Found in the gene: LotjaGi1g1v0704400
Domains
11
LotjaGi1g1v0704400.4
– Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400
Domains
12
LotjaGi1g1v0704400.5
– Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400
Domains
12
LotjaGi1g1v0723300.1
– Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300
Domains
12
LotjaGi1g1v0723300.2
– Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300
Domains
12
LotjaGi2g1v0090100.1
– Cleavage stimulation factor subunit 3; TAIR: AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GUP1|CTF77_ARATH Cleavage stimulation factor subunit 77; TrEMBL-Plants: tr|V7C004|V7C004_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0090100
Domains
13
LotjaGi2g1v0186200.1
– UPF0614 protein C14orf102 family; TAIR: AT3G17740.1 hypothetical protein; Swiss-Prot: sp|Q9H7Z3|NRDE2_HUMAN Protein NRDE2 homolog; TrEMBL-Plants: tr|A0A151S8I5|A0A151S8I5_CAJCA UPF0614 protein C14orf102 family; Found in the gene: LotjaGi2g1v0186200
Domains
10
LotjaGi3g1v0443200.1
– Pre-mRNA splicing factor-like protein; TAIR: AT4G03430.1 pre-mRNA splicing factor-like protein; Swiss-Prot: sp|Q9ZT71|STA1_ARATH Protein STABILIZED1; TrEMBL-Plants: tr|V7BV27|V7BV27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0443200
Domains
20
LotjaGi4g1v0330900.1
– PsbB mRNA maturation factor; TAIR: AT3G17040.1 high chlorophyll fluorescent 107; Swiss-Prot: sp|Q8RWG2|CF107_ARATH Protein high chlorophyll fluorescent 107; TrEMBL-Plants: tr|G7JNW2|G7JNW2_MEDTR PsbB mRNA maturation factor Mbb1; Found in the gene: LotjaGi4g1v0330900
Domains
14
LotjaGi4g1v0383300.1
– Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|A0A0B2SU39|A0A0B2SU39_GLYSO Pre-mRNA-processing factor 39; Found in the gene: LotjaGi4g1v0383300
Domains
8
LotjaGi5g1v0035200.1
– Squamous cell carcinoma antigen recognized by T-cells 3; TAIR: AT4G24270.2 EMBRYO DEFECTIVE 140; Swiss-Prot: sp|B3DJT0|SART3_DANRE Squamous cell carcinoma antigen recognized by T-cells 3; TrEMBL-Plants: tr|I1LT91|I1LT91_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0035200
Domains
16
LotjaGi5g1v0113300.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT3G11964.2 RIBOSOMAL RNA PROCESSING 5; Swiss-Prot: sp|F4J8K6|RRP5_ARATH rRNA biogenesis protein RRP5; TrEMBL-Plants: tr|I1JFV5|I1JFV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0113300
Domains
21
LotjaGi5g1v0160600.1
– Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095; TrEMBL-Plants: tr|A0A151T122|A0A151T122_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0160600
Domains
12
LotjaGi6g1v0112400.1
– Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT2G29670.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095; TrEMBL-Plants: tr|A0A0L9VD14|A0A0L9VD14_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112400
Domains
15
LotjaGi6g1v0338100.1
– Pre-mRNA-splicing factor SYF1; TAIR: AT5G28740.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1; TrEMBL-Plants: tr|K7M1P8|K7M1P8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0338100
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.50