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IPR014041 is a ESCRT-II complex, Vps25 subunit, N-terminal winged helix.
<p>This superfamily represents the N-terminal winged helix domain of the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) [[cite:PUB00035959]]. ESCRT-II recruits the transport machinery for protein sorting at MVB [[cite:PUB00019521]]. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo [[cite:PUB00019520]].</p> <p>ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [[cite:PUB00032375]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Vacuolar protein sorting-associated protein [Medicago truncatula] gi|357484837|ref|XP_003612706.1| | 8 | ||
– | Vacuolar protein sorting-associated protein [Medicago truncatula] gi|357484837|ref|XP_003612706.1| | 9 | ||
– | Vacuolar protein sorting-associated protein 25; TAIR: AT4G19003.1 E2F/DP family winged-helix DNA-binding domain-containing protein; Swiss-Prot: sp|Q8VZC9|VPS25_ARATH Vacuolar protein sorting-associated protein 25; TrEMBL-Plants: tr|I3SXY8|I3SXY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0338500 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
SSF46785 | SUPERFAMILY | 1 | 33.33 |