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Lj2g3v1510860.2

Overview

Field Value
Gene ID Lj2g3v1510860
Transcript ID Lj2g3v1510860.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Vacuolar protein sorting-associated protein [Medicago truncatula] gi|357484837|ref|XP_003612706.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13149:SF0
4 157 154 6.60E-80 –
PANTHER
PTHR13149
4 157 154 6.60E-80
IPR008570
Gene3D
G3DSA:1.10.10.570
6 103 98 1.20E-36
IPR014041
SUPERFAMILY
SSF46785
7 107 101 1.05E-30
IPR011991
Pfam
PF05871
13 145 133 6.00E-41
IPR008570
SUPERFAMILY
SSF46785
102 157 56 1.06E-10
IPR011991
Gene3D
G3DSA:1.10.10.10
104 157 54 2.60E-16
IPR011991

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000814
Cellular component ESCRT II complex An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes.
Subterm of
Part of
GO:0071985
Biological process Multivesicular body sorting pathway A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj2g3v1510860.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1510860.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.